Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   A6J85_RS04140 Genome accession   NZ_CP020450
Coordinates   824887..826536 (-) Length   549 a.a.
NCBI ID   WP_012131057.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 819887..831536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS04125 (A6J85_04085) rpsD 820182..820793 (+) 612 WP_008810013.1 30S ribosomal protein S4 -
  A6J85_RS04130 (A6J85_04090) comA 821247..823400 (+) 2154 WP_012131060.1 peptide cleavage/export ABC transporter ComA Regulator
  A6J85_RS04135 (A6J85_04095) comB 823410..824768 (+) 1359 WP_012131059.1 competence pheromone export protein ComB Regulator
  A6J85_RS04140 (A6J85_04100) lytF 824887..826536 (-) 1650 WP_012131057.1 GBS Bsp-like repeat-containing protein Regulator
  A6J85_RS04145 (A6J85_04105) purD 826781..828040 (+) 1260 WP_012131055.1 phosphoribosylamine--glycine ligase -
  A6J85_RS04150 (A6J85_04110) - 828100..829293 (+) 1194 WP_012131054.1 ATP-grasp domain-containing protein -
  A6J85_RS04155 (A6J85_04115) purE 829313..829801 (+) 489 WP_012131053.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  A6J85_RS04160 (A6J85_04120) purK 829788..830879 (+) 1092 WP_082307319.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  A6J85_RS04165 (A6J85_04125) - 830881..831144 (+) 264 WP_082307782.1 hypothetical protein -
  A6J85_RS04170 (A6J85_04130) - 831165..831392 (+) 228 WP_082307320.1 phosphoribosylaminoimidazole carboxylase -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 60540.38 Da        Isoelectric Point: 9.1621

>NTDB_id=223166 A6J85_RS04140 WP_012131057.1 824887..826536(-) (lytF) [Streptococcus gordonii strain FDAARGOS_257]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVYVQLEGQTAIVQYQPTAAQEAYTIQHAVWSEEGGQDDIV
WYSADQSTTRIDLSQHKGQGKFLIETYLNVNSVKYHLSSKSVFLNKPVQSTEKTVPEQQDSTSSNNATPQAPAEPKPTNP
APTPAPAPATNRVENPRNSYPKVEERNKSLPPQKVAQPKVAPPQAEPNNNKPLQASAARVPAEPVRDSKPLISITNINKE
NGTYTVRVQENPYSKKIKSVQVPIWSTANQSNLKWYEASKIGNGSFSVQFDIRNHQQIYGNYINHVYITYEDGSRVGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSTYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVAVRKPLNHTTDPSNTYPVGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGSTPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=223166 A6J85_RS04140 WP_012131057.1 824887..826536(-) (lytF) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGTTGACCTCACTATCTGCTCCATTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAACTGACGGCTATGACCAGCGAAGTTTACGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ACCAACCGACCGCTGCGCAAGAAGCTTATACCATCCAACATGCCGTCTGGTCTGAGGAGGGAGGCCAAGACGATATTGTC
TGGTATTCAGCTGATCAAAGCACGACCAGGATTGACTTGTCTCAACACAAGGGCCAGGGTAAATTTCTCATCGAGACTTA
TCTCAATGTGAATAGTGTCAAATATCACTTGAGTAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAATCAACCGAAAAAA
CTGTCCCTGAACAGCAAGACAGCACTTCGTCTAACAATGCCACACCTCAAGCACCGGCTGAGCCAAAACCAACTAACCCA
GCACCTACTCCAGCTCCGGCTCCCGCGACCAATAGAGTTGAAAATCCTCGGAACTCCTATCCAAAAGTCGAAGAGCGAAA
CAAATCTCTTCCTCCTCAAAAGGTAGCTCAACCAAAGGTGGCGCCCCCTCAGGCAGAGCCAAACAACAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTACCGGCAGAGCCTGTCAGAGACAGCAAGCCACTCATCAGTATTACCAACATTAATAAGGAA
AATGGAACCTATACCGTAAGGGTCCAAGAAAACCCTTATTCCAAGAAAATTAAAAGTGTGCAGGTGCCTATTTGGAGCAC
CGCAAATCAAAGCAATCTTAAATGGTATGAGGCTTCAAAGATAGGTAACGGAAGCTTTTCTGTTCAATTCGACATCCGAA
ATCACCAGCAGATTTACGGCAACTATATCAATCACGTCTACATTACCTATGAAGACGGTAGCCGAGTTGGCTATGTTGCT
GAAAATGTCAATCTGCCTCAGCCAGCACCCCAACCACTAACTCCGAGTCTGCAAGTGGTTCATAAAGGCCAATCGACCTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATCCTCTTCCCCATCTGGTCAGATATTAATGGCCAAGACGACC
TCCGCTGGTATACAGCTAATTCTCTTGGTAATGGGCGCTATTCGTTAGATTTCAACGCCAACAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGCGGGAAAGTAACGGGTGTCATGGCCTCTAATTTTCAAGTAACACGCCC
AACGGTAGCTGTGAGAAAACCTCTTAACCATACGACCGACCCAAGTAATACTTACCCTGTTGGTGAATGCACATGGGGTG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGATCCACACCTCAGGTCGGAGCCATTGCCTGCTGGACTGACGGTGGATACGGACATGTCGGCGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATCGCTAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGCACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterproScan.

CHAP domain (CHAP)

(443-520)

GBS Bsp-like repeat (GBS_Bsp-like)

(342-414)

GBS Bsp-like repeat (GBS_Bsp-like)

(234-319)

GBS Bsp-like repeat (GBS_Bsp-like)

(53-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii str. Challis substr. CH1

100

100

1
  lytF Streptococcus gordonii strain NCTC7865

95.446

100

0.954

Multiple sequence alignment