Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   A6J85_RS00460 Genome accession   NZ_CP020450
Coordinates   86723..87385 (+) Length   220 a.a.
NCBI ID   WP_061598763.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 81723..92385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS00425 (A6J85_00425) - 82040..82318 (-) 279 WP_008809110.1 DUF3165 family protein -
  A6J85_RS00430 (A6J85_00430) typA 82342..84189 (-) 1848 WP_082307113.1 translational GTPase TypA -
  A6J85_RS00435 (A6J85_00435) - 84371..85096 (+) 726 WP_008809112.1 16S rRNA pseudouridine(516) synthase -
  A6J85_RS00440 (A6J85_00440) - 85262..85648 (-) 387 WP_008809113.1 rhodanese-like domain-containing protein -
  A6J85_RS00445 (A6J85_00445) - 85636..85860 (-) 225 WP_075202768.1 YqgQ family protein -
  A6J85_RS00450 (A6J85_00450) - 86039..86554 (-) 516 WP_008809115.1 DNA starvation/stationary phase protection protein -
  A6J85_RS00460 (A6J85_00455) cclA/cilC 86723..87385 (+) 663 WP_061598763.1 A24 family peptidase Machinery gene
  A6J85_RS00465 (A6J85_00460) - 87379..87828 (-) 450 WP_105165072.1 effector binding domain-containing protein -
  A6J85_RS00470 (A6J85_00465) - 87907..88806 (+) 900 WP_048775287.1 YafY family protein -
  A6J85_RS00475 (A6J85_00470) trpA 89012..89791 (-) 780 WP_061598765.1 tryptophan synthase subunit alpha -
  A6J85_RS00480 (A6J85_00475) trpB 89784..91007 (-) 1224 WP_082307114.1 tryptophan synthase subunit beta -
  A6J85_RS00485 (A6J85_00480) - 90997..91584 (-) 588 WP_061586151.1 phosphoribosylanthranilate isomerase -
  A6J85_RS00490 (A6J85_00485) trpC 91571..92338 (-) 768 WP_061586152.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 24844.13 Da        Isoelectric Point: 8.7397

>NTDB_id=223145 A6J85_RS00460 WP_061598763.1 86723..87385(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS_257]
MIHLYFFLVGTVFASFLGLVIDRFPEQSIIAPASHCNACGKRLAPRDLIPIFSQVMNRLRCRFCGDKIPLRYLFFECLLG
GLFLATSLSILSISQLLVVTMGLTLAIYDQRDQQYPLMVWLIFQLLLMVTAGINLLMLFFLALGLLAFFYNLRIGAGDFL
FLASCSAFFSLTEALILIQIASFSGLACFCFKKKKDRLAFVPCLLFGVVVIIFYKSLLFY

Nucleotide


Download         Length: 663 bp        

>NTDB_id=223145 A6J85_RS00460 WP_061598763.1 86723..87385(+) (cclA/cilC) [Streptococcus gordonii strain FDAARGOS_257]
ATGATTCACCTATACTTTTTTCTTGTTGGTACCGTCTTTGCCTCATTCCTAGGCTTGGTCATCGACCGCTTCCCAGAGCA
GTCTATCATCGCTCCAGCTAGCCATTGCAATGCCTGCGGGAAAAGATTGGCACCGCGTGATTTGATTCCTATTTTTTCCC
AAGTCATGAACCGGCTTCGTTGCCGCTTCTGCGGAGATAAGATTCCCTTACGCTATTTATTTTTTGAATGTCTCTTGGGC
GGTCTTTTTCTGGCAACTTCTCTGAGCATTCTTTCCATTAGTCAATTATTGGTAGTCACCATGGGCTTAACCTTAGCTAT
CTACGATCAAAGAGATCAACAGTATCCCTTGATGGTCTGGTTAATTTTTCAGCTCTTGCTGATGGTGACAGCAGGCATCA
ATCTTCTCATGCTTTTCTTTTTAGCCTTAGGACTTCTAGCCTTCTTCTACAATCTTCGTATTGGTGCTGGTGACTTTCTA
TTTCTGGCGTCCTGCTCAGCTTTTTTCAGTTTGACAGAGGCCCTCATCCTTATCCAAATCGCTAGCTTCTCTGGCCTCGC
CTGCTTCTGCTTTAAAAAGAAAAAAGACAGGCTGGCATTTGTACCCTGTCTTTTGTTTGGTGTGGTGGTGATTATTTTCT
ATAAATCCCTACTCTTTTACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

61.927

99.091

0.614

  cclA/cilC Streptococcus mitis SK321

61.009

99.091

0.605

  cclA/cilC Streptococcus pneumoniae Rx1

60.092

99.091

0.595

  cclA/cilC Streptococcus pneumoniae D39

60.092

99.091

0.595

  cclA/cilC Streptococcus pneumoniae R6

60.092

99.091

0.595

  cclA/cilC Streptococcus pneumoniae TIGR4

59.174

99.091

0.586


Multiple sequence alignment