Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PFL_RS28150 Genome accession   NC_004129
Coordinates   6341580..6342089 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas protegens Pf-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6336580..6347089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL_RS28135 (PFL_5549) - 6337299..6338585 (+) 1287 WP_011063764.1 hypothetical protein -
  PFL_RS28140 (PFL_5550) - 6338589..6340415 (+) 1827 WP_011063765.1 hypothetical protein -
  PFL_RS28145 (PFL_5551) - 6340430..6341482 (+) 1053 WP_011063766.1 hypothetical protein -
  PFL_RS28150 (PFL_5552) ssb 6341580..6342089 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  PFL_RS28155 (PFL_5553) - 6342099..6343493 (-) 1395 WP_011063768.1 MFS transporter -
  PFL_RS28160 (PFL_5554) uvrA 6343672..6346506 (+) 2835 WP_011063769.1 excinuclease ABC subunit UvrA -
  PFL_RS28165 (PFL_5555) bfr 6346625..6347089 (-) 465 WP_011063770.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=22310 PFL_RS28150 WP_011063767.1 6341580..6342089(-) (ssb) [Pseudomonas protegens Pf-5]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=22310 PFL_RS28150 WP_011063767.1 6341580..6342089(-) (ssb) [Pseudomonas protegens Pf-5]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCTGCTCCGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCGCAGCCGGCTCCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491

Multiple sequence alignment