Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RK51_RS05855 Genome accession   NZ_CP026041
Coordinates   1122017..1122469 (-) Length   150 a.a.
NCBI ID   WP_005493986.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117017..1127469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS05835 (RK51_005835) coaE 1117534..1118148 (-) 615 WP_005493969.1 dephospho-CoA kinase -
  RK51_RS05840 (RK51_005840) pilD 1118149..1119018 (-) 870 WP_005493974.1 A24 family peptidase Machinery gene
  RK51_RS05845 (RK51_005845) pilC 1119083..1120306 (-) 1224 WP_005493981.1 type II secretion system F family protein Machinery gene
  RK51_RS05850 (RK51_005850) pilB 1120330..1122015 (-) 1686 WP_005493983.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RK51_RS05855 (RK51_005855) pilA 1122017..1122469 (-) 453 WP_005493986.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RK51_RS05860 (RK51_005860) nadC 1122733..1123620 (-) 888 WP_005493988.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RK51_RS05865 (RK51_005865) ampD 1123713..1124264 (+) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RK51_RS05870 (RK51_005870) pdhR 1124670..1125437 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15708.99 Da        Isoelectric Point: 7.1316

>NTDB_id=223087 RK51_RS05855 WP_005493986.1 1122017..1122469(-) (pilA) [Vibrio parahaemolyticus strain FDAARGOS_51]
MKHSKQKKQQGFTLIELMIVVGIIGIISALAVPAYKSYVLKTEANTAVGVPRALLANVDLFVQEKGKYPDSTQTADLAAI
GAAIDMSAMGTLAITPDADGSEYGDIEFTIGSNASLSGKKVTFARSTNGWKCTHDTGQDLKGCATTPATP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=223087 RK51_RS05855 WP_005493986.1 1122017..1122469(-) (pilA) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTTGGGATTATTGGGATTAT
AAGTGCATTAGCTGTACCAGCTTATAAAAGCTATGTACTAAAAACCGAAGCTAATACTGCTGTGGGCGTGCCAAGAGCCT
TGTTAGCAAACGTAGACCTCTTCGTCCAAGAAAAAGGTAAATACCCTGATTCTACTCAAACTGCCGATCTTGCAGCTATC
GGAGCTGCTATAGATATGAGTGCGATGGGAACTCTTGCTATCACTCCTGACGCAGACGGTTCTGAGTACGGGGACATTGA
GTTTACCATTGGCTCTAATGCTTCATTGAGTGGCAAAAAGGTTACGTTTGCTCGCTCAACTAACGGTTGGAAGTGTACGC
ATGATACAGGTCAAGACCTTAAAGGCTGTGCTACCACTCCAGCAACTCCTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(56-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

37.838

98.667

0.373
  pilA Vibrio parahaemolyticus RIMD 2210633

42.105

88.667

0.373

Multiple sequence alignment