Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J80_RS05950 Genome accession   NZ_CP020442
Coordinates   713370..713858 (+) Length   162 a.a.
NCBI ID   WP_080620822.1    Uniprot ID   A0A1V0GQ40
Organism   Paracoccus yeei strain FDAARGOS_252     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 714521..722933 713370..713858 flank 663


Gene organization within MGE regions


Location: 713370..722933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J80_RS05950 (A6J80_05940) ssb 713370..713858 (+) 489 WP_080620822.1 single-stranded DNA-binding protein Machinery gene
  A6J80_RS05955 (A6J80_05945) - 714108..714524 (+) 417 WP_080620823.1 hypothetical protein -
  A6J80_RS05960 (A6J80_05950) - 714521..715852 (+) 1332 WP_080620824.1 relaxase/mobilization nuclease domain-containing protein -
  A6J80_RS05965 (A6J80_05955) - 715929..716192 (+) 264 WP_080620825.1 type II toxin-antitoxin system ParD family antitoxin -
  A6J80_RS05970 (A6J80_05960) - 716182..716481 (+) 300 WP_254433666.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A6J80_RS05975 (A6J80_05965) - 716548..717285 (+) 738 WP_146113019.1 hypothetical protein -
  A6J80_RS05980 (A6J80_05970) - 717282..717536 (-) 255 WP_080620828.1 hypothetical protein -
  A6J80_RS05985 (A6J80_05975) - 717570..718916 (-) 1347 WP_080620799.1 IS5 family transposase -
  A6J80_RS23550 - 718905..719156 (+) 252 WP_146113020.1 hypothetical protein -
  A6J80_RS05990 (A6J80_05980) - 719273..719863 (+) 591 WP_080620829.1 recombinase family protein -
  A6J80_RS05995 (A6J80_05985) - 719891..720166 (+) 276 WP_080620830.1 hypothetical protein -
  A6J80_RS06000 (A6J80_05990) - 720232..721319 (+) 1088 WP_105291570.1 IS3 family transposase -
  A6J80_RS06005 (A6J80_05995) - 721554..722933 (+) 1380 WP_112887499.1 recombinase family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17647.33 Da        Isoelectric Point: 5.9787

>NTDB_id=223087 A6J80_RS05950 WP_080620822.1 713370..713858(+) (ssb) [Paracoccus yeei strain FDAARGOS_252]
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDEGYSYEGGSSGSGSGRSPSPASRPDFDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=223087 A6J80_RS05950 WP_080620822.1 713370..713858(+) (ssb) [Paracoccus yeei strain FDAARGOS_252]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCGACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGCTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGCGGCGATGAGGGCTATA
GCTACGAAGGCGGGTCCTCGGGCAGCGGCTCGGGCCGCAGCCCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GQ40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.537
  ssb Vibrio cholerae strain A1552

48.588

100

0.531
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.463
  ssb Neisseria meningitidis MC58

41.899

100

0.463

Multiple sequence alignment