Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A6J74_RS17095 Genome accession   NZ_CP020437
Coordinates   2940706..2941227 (+) Length   173 a.a.
NCBI ID   WP_000981965.1    Uniprot ID   A0A8I1GPV4
Organism   Bacillus sp. FDAARGOS_235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2935706..2946227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS17065 (A6J74_17090) spo0J 2936155..2937006 (+) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -
  A6J74_RS17070 (A6J74_17095) yyaC 2937027..2937623 (-) 597 WP_001020736.1 spore protease YyaC -
  A6J74_RS17075 (A6J74_17100) - 2937883..2938764 (+) 882 WP_000365117.1 mechanosensitive ion channel family protein -
  A6J74_RS17080 (A6J74_17105) - 2938824..2938982 (+) 159 WP_153580223.1 DUF951 domain-containing protein -
  A6J74_RS17085 (A6J74_17110) ychF 2939097..2940197 (+) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  A6J74_RS17090 (A6J74_17115) rpsF 2940389..2940679 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  A6J74_RS17095 (A6J74_17120) ssbA 2940706..2941227 (+) 522 WP_000981965.1 single-stranded DNA-binding protein Machinery gene
  A6J74_RS17100 (A6J74_17125) rpsR 2941272..2941505 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  A6J74_RS17105 (A6J74_17130) - 2941586..2942521 (+) 936 WP_000814850.1 YybS family protein -
  A6J74_RS17110 (A6J74_17135) - 2942600..2944573 (+) 1974 WP_001113907.1 DHH family phosphoesterase -
  A6J74_RS17115 (A6J74_17140) rplI 2944570..2945016 (+) 447 WP_000864222.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18741.50 Da        Isoelectric Point: 4.9222

>NTDB_id=223059 A6J74_RS17095 WP_000981965.1 2940706..2941227(+) (ssbA) [Bacillus sp. FDAARGOS_235]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNTGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=223059 A6J74_RS17095 WP_000981965.1 2940706..2941227(+) (ssbA) [Bacillus sp. FDAARGOS_235]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGTAACACTGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37

Multiple sequence alignment