Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C2I05_RS16245 Genome accession   NZ_CP026039
Coordinates   3069875..3070522 (+) Length   215 a.a.
NCBI ID   WP_085186395.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064875..3075522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS16230 (C2I05_16225) glpD 3065046..3066713 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  C2I05_RS16235 (C2I05_16230) pgcA 3066845..3068590 (+) 1746 WP_249848305.1 phosphoglucomutase -
  C2I05_RS16240 (C2I05_16235) yhcY 3068739..3069878 (+) 1140 WP_021479676.1 two-component system sensor histidine kinase YhcY -
  C2I05_RS16245 (C2I05_16240) vraR 3069875..3070522 (+) 648 WP_085186395.1 two-component system response regulator YhcZ Regulator
  C2I05_RS16250 (C2I05_16245) yhdA 3070519..3071043 (+) 525 WP_021479674.1 FMN-dependent NADPH-azoreductase -
  C2I05_RS16255 (C2I05_16250) yhdB 3071058..3071300 (-) 243 WP_003233373.1 YhdB family protein -
  C2I05_RS16260 (C2I05_16255) yhdC 3071501..3071824 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  C2I05_RS16265 (C2I05_16260) lytF 3071866..3073332 (-) 1467 WP_120027930.1 peptidoglycan endopeptidase LytF -
  C2I05_RS16270 (C2I05_16265) nsrR 3073486..3073926 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=222995 C2I05_RS16245 WP_085186395.1 3069875..3070522(+) (vraR) [Bacillus subtilis strain PK1_2]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=222995 C2I05_RS16245 WP_085186395.1 3069875..3070522(+) (vraR) [Bacillus subtilis strain PK1_2]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment