Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J72_RS03880 Genome accession   NZ_CP020433
Coordinates   789778..790269 (-) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 784778..795269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS03860 (A6J72_03870) - 786795..787739 (+) 945 WP_003070861.1 magnesium transporter CorA family protein -
  A6J72_RS03865 (A6J72_03875) - 787755..788432 (+) 678 WP_003074532.1 DUF1129 domain-containing protein -
  A6J72_RS03870 (A6J72_03880) - 788584..789093 (-) 510 WP_082311815.1 GNAT family N-acetyltransferase -
  A6J72_RS03875 (A6J72_03885) rpsR 789502..789741 (-) 240 WP_082311816.1 30S ribosomal protein S18 -
  A6J72_RS03880 (A6J72_03890) ssb 789778..790269 (-) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  A6J72_RS03885 (A6J72_03895) rpsF 790281..790571 (-) 291 WP_003074536.1 30S ribosomal protein S6 -
  A6J72_RS03890 (A6J72_03900) - 790848..791891 (+) 1044 WP_082311817.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  A6J72_RS03895 (A6J72_03905) - 791888..792793 (+) 906 WP_082311818.1 phosphodiester glycosidase family protein -
  A6J72_RS03900 (A6J72_03910) - 792768..793196 (+) 429 WP_082311819.1 hypothetical protein -
  A6J72_RS03905 (A6J72_03915) - 793382..793669 (-) 288 Protein_763 hydrolase -
  A6J72_RS03910 (A6J72_03920) - 793847..794362 (-) 516 WP_082311820.1 thioredoxin domain-containing protein -
  A6J72_RS03915 (A6J72_03925) - 794352..795161 (-) 810 WP_003074542.1 CDP-diacylglycerol diphosphatase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=222995 A6J72_RS03880 WP_003030533.1 789778..790269(-) (ssb) [Streptococcus intermedius strain FDAARGOS_233]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=222995 A6J72_RS03880 WP_003030533.1 789778..790269(-) (ssb) [Streptococcus intermedius strain FDAARGOS_233]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATTAACGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment