Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAG_RS06795 Genome accession   NC_004116
Coordinates   802901..803848 (+) Length   315 a.a.
NCBI ID   WP_000903642.1    Uniprot ID   A0AAV3JK20
Organism   Streptococcus agalactiae 2603V/R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797901..808848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAG_RS06770 (SAG0798) - 798250..798930 (+) 681 WP_000656582.1 VIT1/CCC1 transporter family protein -
  SAG_RS06775 (SAG0799) - 799081..799782 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  SAG_RS06780 (SAG0800) - 799854..800810 (-) 957 WP_000523788.1 glutathione S-transferase family protein -
  SAG_RS06785 (SAG0801) - 800906..801625 (+) 720 WP_001234957.1 16S rRNA pseudouridine(516) synthase -
  SAG_RS06790 (SAG0803) - 801698..802849 (+) 1152 WP_001086200.1 MFS transporter -
  SAG_RS06795 (SAG0804) coiA 802901..803848 (+) 948 WP_000903642.1 competence protein CoiA Machinery gene
  SAG_RS06800 (SAG0805) pepF 803864..805669 (+) 1806 WP_001282902.1 oligoendopeptidase F Regulator
  SAG_RS06805 (SAG0806) - 805864..806490 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  SAG_RS06810 (SAG0807) - 806564..807271 (+) 708 WP_000250853.1 O-methyltransferase -
  SAG_RS06815 (SAG0808) prsA 807332..808261 (+) 930 WP_000857822.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37807.57 Da        Isoelectric Point: 9.5842

>NTDB_id=22275 SAG_RS06795 WP_000903642.1 802901..803848(+) (coiA) [Streptococcus agalactiae 2603V/R]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=22275 SAG_RS06795 WP_000903642.1 802901..803848(+) (coiA) [Streptococcus agalactiae 2603V/R]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAGGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTAGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment