Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C2H93_RS11970 Genome accession   NZ_CP026036
Coordinates   2331184..2331879 (-) Length   231 a.a.
NCBI ID   WP_021480240.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2326184..2336879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS11945 (C2H93_11925) minD 2327120..2327926 (-) 807 WP_042975118.1 septum site-determining protein MinD -
  C2H93_RS11950 (C2H93_11930) minC 2327928..2328608 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  C2H93_RS11955 (C2H93_11935) mreD 2328661..2329179 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  C2H93_RS11960 (C2H93_11940) mreC 2329176..2330048 (-) 873 WP_038829628.1 rod shape-determining protein MreC -
  C2H93_RS11965 (C2H93_11945) mreB 2330079..2331092 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H93_RS11970 (C2H93_11950) ysxA/radC 2331184..2331879 (-) 696 WP_021480240.1 DNA repair protein RadC Machinery gene
  C2H93_RS11975 (C2H93_11955) maf 2331916..2332485 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C2H93_RS11980 (C2H93_11960) spoIIB 2332638..2333636 (-) 999 WP_249852215.1 stage II sporulation protein SpoIIB -
  C2H93_RS11985 (C2H93_11965) comC 2333770..2334516 (-) 747 WP_249852216.1 A24 family peptidase Machinery gene
  C2H93_RS11990 (C2H93_11970) folC 2334657..2335949 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26137.47 Da        Isoelectric Point: 7.9141

>NTDB_id=222533 C2H93_RS11970 WP_021480240.1 2331184..2331879(-) (ysxA/radC) [Bacillus subtilis strain PK5_16]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=222533 C2H93_RS11970 WP_021480240.1 2331184..2331879(-) (ysxA/radC) [Bacillus subtilis strain PK5_16]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGTGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGAAGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment