Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J40_RS08820 Genome accession   NZ_CP020412
Coordinates   2003655..2004128 (+) Length   157 a.a.
NCBI ID   WP_003633038.1    Uniprot ID   D3HPN2
Organism   Legionella longbeachae strain FDAARGOS_201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1998655..2009128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J40_RS08800 (A6J40_08770) - 1998921..2000288 (+) 1368 WP_012978808.1 MFS transporter -
  A6J40_RS08805 (A6J40_08775) - 2000260..2000880 (-) 621 WP_003633035.1 hypothetical protein -
  A6J40_RS08810 (A6J40_08780) - 2000900..2001997 (-) 1098 WP_223800098.1 hypothetical protein -
  A6J40_RS08815 (A6J40_08785) queF 2002180..2003037 (-) 858 WP_035904797.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  A6J40_RS19040 - 2003278..2003430 (-) 153 Protein_1734 MerR family DNA-binding transcriptional regulator -
  A6J40_RS08820 (A6J40_08790) ssb 2003655..2004128 (+) 474 WP_003633038.1 single-stranded DNA-binding protein Machinery gene
  A6J40_RS08830 (A6J40_08800) - 2004741..2005001 (+) 261 WP_003633040.1 IS110 family transposase -
  A6J40_RS08835 (A6J40_08805) rplQ 2005730..2006113 (-) 384 WP_003633046.1 50S ribosomal protein L17 -
  A6J40_RS08840 (A6J40_08810) - 2006131..2007123 (-) 993 WP_003633048.1 DNA-directed RNA polymerase subunit alpha -
  A6J40_RS08845 (A6J40_08815) rpsD 2007142..2007762 (-) 621 WP_003633050.1 30S ribosomal protein S4 -
  A6J40_RS08850 (A6J40_08820) rpsK 2007779..2008177 (-) 399 WP_003633055.1 30S ribosomal protein S11 -
  A6J40_RS08855 (A6J40_08825) rpsM 2008199..2008555 (-) 357 WP_003633056.1 30S ribosomal protein S13 -
  A6J40_RS08860 (A6J40_08830) rpmJ 2008635..2008748 (-) 114 WP_012978806.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17580.51 Da        Isoelectric Point: 4.9833

>NTDB_id=222445 A6J40_RS08820 WP_003633038.1 2003655..2004128(+) (ssb) [Legionella longbeachae strain FDAARGOS_201]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSEAWKDKATGEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGGASSSFDDIPQGQFAPSNQNFTKKQPTQQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=222445 A6J40_RS08820 WP_003633038.1 2003655..2004128(+) (ssb) [Legionella longbeachae strain FDAARGOS_201]
ATGGCACGTGGAATAAACAAAGTGATACTCATTGGTAACGTAGGTGTTGATCCTGACGTACGATATTTACCTAATGGCAA
TGCAGTAACTACACTCTCAATCGCTACCAGTGAAGCATGGAAGGATAAGGCTACTGGTGAAAAACAAGAAAGAACCGAAT
GGCATCGGGTGGTTTGTTTTAATCGTTTAGGGGAAATTGCTGGCGAATATGTGCGCAAAGGATCAAAACTTTATGTCGAA
GGAAGCTTAAGAACCAGAAAATGGCAAGATCAACAAGGACAAGATAGATATACTACGGAGATTGTTGCCAACGACATACA
AATGTTAGATAGCAAAGGAGGAGCATCATCAAGTTTTGATGATATCCCACAAGGCCAATTTGCACCAAGCAACCAAAACT
TTACAAAAAAACAACCTACCCAACAAGTCCCACAAGATGCTTTTGATCAATTAGATGATGATGTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HPN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.592
  ssb Vibrio cholerae strain A1552

49.143

100

0.548
  ssb Neisseria meningitidis MC58

42.197

100

0.465
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.465

Multiple sequence alignment