Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A6J57_RS09575 | Genome accession | NZ_CP020405 |
| Coordinates | 2050808..2051257 (-) | Length | 149 a.a. |
| NCBI ID | WP_005756690.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain FDAARGOS_218 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2046416..2107384 | 2050808..2051257 | within | 0 |
Gene organization within MGE regions
Location: 2046416..2107384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J57_RS09535 (A6J57_09520) | - | 2046416..2047447 (-) | 1032 | WP_005756705.1 | tyrosine-type recombinase/integrase | - |
| A6J57_RS09540 (A6J57_09525) | - | 2047449..2047700 (-) | 252 | WP_032854027.1 | DUF4224 domain-containing protein | - |
| A6J57_RS11050 | - | 2047737..2048063 (-) | 327 | WP_005756703.1 | hypothetical protein | - |
| A6J57_RS11105 | - | 2048067..2048540 (-) | 474 | WP_005756701.1 | hypothetical protein | - |
| A6J57_RS09555 (A6J57_09535) | - | 2048605..2048835 (-) | 231 | WP_005756699.1 | hypothetical protein | - |
| A6J57_RS09560 (A6J57_09540) | - | 2048845..2049129 (-) | 285 | WP_005756697.1 | DUF6378 domain-containing protein | - |
| A6J57_RS11055 | - | 2049126..2049284 (-) | 159 | WP_005756695.1 | hypothetical protein | - |
| A6J57_RS09565 (A6J57_09545) | - | 2049348..2049986 (-) | 639 | WP_005756693.1 | Bro-N domain-containing protein | - |
| A6J57_RS09570 (A6J57_09550) | - | 2050288..2050695 (-) | 408 | WP_032854026.1 | GNAT family N-acetyltransferase | - |
| A6J57_RS09575 (A6J57_09555) | ssb | 2050808..2051257 (-) | 450 | WP_005756690.1 | single-stranded DNA-binding protein | Machinery gene |
| A6J57_RS09580 (A6J57_09560) | - | 2051268..2051888 (-) | 621 | WP_005756689.1 | ERF family protein | - |
| A6J57_RS11110 (A6J57_09565) | - | 2052084..2052695 (-) | 612 | WP_005756687.1 | antA/AntB antirepressor family protein | - |
| A6J57_RS09590 (A6J57_09570) | - | 2053036..2054061 (-) | 1026 | WP_005756686.1 | hypothetical protein | - |
| A6J57_RS09595 (A6J57_09575) | - | 2054144..2054794 (-) | 651 | WP_005756684.1 | ribonuclease H-like domain-containing protein | - |
| A6J57_RS09600 (A6J57_09580) | - | 2054797..2055384 (-) | 588 | WP_005756682.1 | hypothetical protein | - |
| A6J57_RS11070 | - | 2055558..2055719 (-) | 162 | WP_005756680.1 | hypothetical protein | - |
| A6J57_RS09605 (A6J57_09585) | - | 2055732..2055959 (-) | 228 | WP_032854021.1 | hypothetical protein | - |
| A6J57_RS09610 (A6J57_09590) | - | 2055946..2056236 (-) | 291 | WP_005756670.1 | hypothetical protein | - |
| A6J57_RS09615 (A6J57_09595) | - | 2056322..2056948 (-) | 627 | WP_005756667.1 | BRO family protein | - |
| A6J57_RS09620 (A6J57_09600) | - | 2057368..2058624 (-) | 1257 | WP_032854019.1 | hypothetical protein | - |
| A6J57_RS09625 (A6J57_09605) | - | 2058707..2059504 (-) | 798 | WP_032854018.1 | hypothetical protein | - |
| A6J57_RS09630 (A6J57_09610) | - | 2059622..2060086 (-) | 465 | WP_050547907.1 | DUF4760 domain-containing protein | - |
| A6J57_RS09635 (A6J57_09615) | - | 2060539..2060766 (-) | 228 | WP_032854017.1 | hypothetical protein | - |
| A6J57_RS09640 (A6J57_09620) | - | 2061009..2061218 (-) | 210 | WP_005756656.1 | hypothetical protein | - |
| A6J57_RS09645 (A6J57_09625) | - | 2061231..2061398 (+) | 168 | WP_005756653.1 | DUF1508 domain-containing protein | - |
| A6J57_RS09650 (A6J57_09630) | - | 2061709..2062023 (+) | 315 | WP_005756650.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A6J57_RS09655 (A6J57_09635) | - | 2062020..2062310 (+) | 291 | WP_005756647.1 | addiction module antidote protein | - |
| A6J57_RS09660 (A6J57_09640) | - | 2062334..2063041 (-) | 708 | WP_005756645.1 | MAE_28990/MAE_18760 family HEPN-like nuclease | - |
| A6J57_RS09665 (A6J57_09645) | - | 2063038..2064105 (-) | 1068 | WP_005756643.1 | DUF262 domain-containing protein | - |
| A6J57_RS09670 (A6J57_09650) | - | 2064149..2064838 (-) | 690 | WP_005756642.1 | helix-turn-helix transcriptional regulator | - |
| A6J57_RS09675 (A6J57_09655) | - | 2064966..2065175 (+) | 210 | WP_005720263.1 | helix-turn-helix transcriptional regulator | - |
| A6J57_RS09680 (A6J57_09660) | - | 2065196..2065471 (+) | 276 | WP_005756640.1 | hypothetical protein | - |
| A6J57_RS09685 (A6J57_09665) | - | 2065474..2065881 (-) | 408 | WP_032854015.1 | hypothetical protein | - |
| A6J57_RS09690 (A6J57_09670) | - | 2065988..2066233 (+) | 246 | WP_005725517.1 | helix-turn-helix domain-containing protein | - |
| A6J57_RS09695 (A6J57_09675) | - | 2066311..2067129 (+) | 819 | WP_005756636.1 | hypothetical protein | - |
| A6J57_RS09700 (A6J57_09680) | - | 2067126..2068484 (+) | 1359 | WP_005756635.1 | replicative DNA helicase | - |
| A6J57_RS09705 (A6J57_09685) | - | 2068487..2068912 (+) | 426 | WP_005756633.1 | recombination protein NinB | - |
| A6J57_RS09710 (A6J57_09690) | - | 2069003..2069221 (+) | 219 | WP_005756632.1 | hypothetical protein | - |
| A6J57_RS09715 (A6J57_09695) | - | 2069221..2069817 (+) | 597 | WP_005756630.1 | recombination protein NinG | - |
| A6J57_RS09720 (A6J57_09700) | - | 2069817..2070182 (+) | 366 | WP_005756628.1 | antiterminator Q family protein | - |
| A6J57_RS09725 (A6J57_09705) | - | 2070259..2071176 (+) | 918 | WP_080527702.1 | DUF4747 family protein | - |
| A6J57_RS09730 (A6J57_09710) | - | 2071186..2071761 (+) | 576 | WP_005756625.1 | hypothetical protein | - |
| A6J57_RS09735 (A6J57_09715) | - | 2072237..2072854 (+) | 618 | WP_032854013.1 | KilA-N domain-containing protein | - |
| A6J57_RS09740 (A6J57_09720) | - | 2073122..2073457 (+) | 336 | WP_005756621.1 | hypothetical protein | - |
| A6J57_RS09745 (A6J57_09725) | - | 2073468..2074019 (+) | 552 | WP_005756619.1 | hypothetical protein | - |
| A6J57_RS09750 (A6J57_09730) | - | 2074134..2074499 (+) | 366 | WP_032854011.1 | phage holin, lambda family | - |
| A6J57_RS09755 (A6J57_09735) | - | 2074471..2075055 (+) | 585 | WP_005756617.1 | glycoside hydrolase family 19 protein | - |
| A6J57_RS09760 (A6J57_09740) | - | 2075058..2075381 (+) | 324 | WP_005756616.1 | DUF2570 family protein | - |
| A6J57_RS09770 (A6J57_09750) | - | 2075600..2076034 (-) | 435 | WP_005756614.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| A6J57_RS09775 (A6J57_09755) | - | 2076063..2076245 (-) | 183 | WP_016533497.1 | type II toxin-antitoxin system HicA family toxin | - |
| A6J57_RS09780 (A6J57_09760) | - | 2076328..2076864 (+) | 537 | WP_005756612.1 | terminase small subunit | - |
| A6J57_RS09785 (A6J57_09765) | - | 2076848..2078080 (+) | 1233 | WP_005756610.1 | PBSX family phage terminase large subunit | - |
| A6J57_RS09790 (A6J57_09770) | - | 2078090..2079493 (+) | 1404 | WP_005756608.1 | DUF4055 domain-containing protein | - |
| A6J57_RS09795 (A6J57_09775) | - | 2079483..2081084 (+) | 1602 | WP_005756605.1 | minor capsid protein | - |
| A6J57_RS09800 (A6J57_09780) | - | 2081087..2081305 (+) | 219 | WP_005756603.1 | hypothetical protein | - |
| A6J57_RS09805 (A6J57_09785) | - | 2081280..2081714 (+) | 435 | WP_005756601.1 | HD domain-containing protein | - |
| A6J57_RS11075 | - | 2081754..2081921 (+) | 168 | WP_169319011.1 | hypothetical protein | - |
| A6J57_RS09810 (A6J57_09790) | - | 2082050..2082835 (+) | 786 | WP_005756599.1 | hypothetical protein | - |
| A6J57_RS09815 (A6J57_09795) | - | 2082853..2084010 (+) | 1158 | WP_005756598.1 | P22 phage major capsid protein family protein | - |
| A6J57_RS09820 (A6J57_09800) | - | 2084067..2084303 (+) | 237 | WP_005756596.1 | HeH/LEM domain-containing protein | - |
| A6J57_RS09825 (A6J57_09805) | - | 2084320..2084787 (+) | 468 | WP_032854009.1 | DnaT-like ssDNA-binding protein | - |
| A6J57_RS09830 (A6J57_09810) | - | 2084789..2085175 (+) | 387 | WP_032854007.1 | hypothetical protein | - |
| A6J57_RS09835 (A6J57_09815) | - | 2085177..2085578 (+) | 402 | WP_005756593.1 | HK97 gp10 family phage protein | - |
| A6J57_RS09840 (A6J57_09820) | - | 2085578..2085916 (+) | 339 | WP_226891716.1 | phage tail terminator-like protein | - |
| A6J57_RS09845 (A6J57_09825) | - | 2085983..2086999 (+) | 1017 | WP_005756589.1 | phage tail tube protein | - |
| A6J57_RS09850 (A6J57_09830) | - | 2087073..2087477 (+) | 405 | WP_005756587.1 | hypothetical protein | - |
| A6J57_RS11115 | - | 2087624..2087815 (+) | 192 | WP_226891717.1 | hypothetical protein | - |
| A6J57_RS09860 (A6J57_09840) | - | 2087823..2088149 (+) | 327 | WP_015691082.1 | phage tail protein | - |
| A6J57_RS09865 (A6J57_09845) | - | 2088167..2091430 (+) | 3264 | WP_005756581.1 | tape measure protein | - |
| A6J57_RS09870 (A6J57_09850) | - | 2091527..2092081 (+) | 555 | WP_005756579.1 | membrane lipoprotein lipid attachment site-containing protein | - |
| A6J57_RS11080 | - | 2092189..2092362 (+) | 174 | WP_165544714.1 | hypothetical protein | - |
| A6J57_RS09875 (A6J57_09855) | - | 2092557..2093075 (+) | 519 | WP_005756575.1 | hypothetical protein | - |
| A6J57_RS09880 (A6J57_09860) | - | 2093077..2093571 (+) | 495 | WP_032854005.1 | type VI secretion system-associated protein TagO | - |
| A6J57_RS09885 (A6J57_09865) | - | 2093691..2095649 (+) | 1959 | WP_005756571.1 | ATP-binding protein | - |
| A6J57_RS09890 (A6J57_09870) | - | 2095743..2096714 (-) | 972 | WP_005756570.1 | P63C domain-containing protein | - |
| A6J57_RS09895 (A6J57_09875) | - | 2097085..2097909 (+) | 825 | WP_032854004.1 | phage antirepressor N-terminal domain-containing protein | - |
| A6J57_RS09900 (A6J57_09880) | - | 2098107..2098631 (+) | 525 | WP_005756566.1 | Rha family transcriptional regulator | - |
| A6J57_RS09905 (A6J57_09885) | - | 2098659..2099309 (+) | 651 | WP_005756565.1 | phage minor tail protein L | - |
| A6J57_RS09910 (A6J57_09890) | - | 2099311..2100033 (+) | 723 | WP_005756564.1 | C40 family peptidase | - |
| A6J57_RS09915 (A6J57_09895) | - | 2100062..2100676 (+) | 615 | WP_005756561.1 | tail assembly protein | - |
| A6J57_RS09920 (A6J57_09900) | - | 2100680..2104327 (+) | 3648 | WP_005756560.1 | host specificity protein J | - |
| A6J57_RS09925 (A6J57_09905) | - | 2104341..2105423 (+) | 1083 | WP_005756558.1 | pyocin knob domain-containing protein | - |
| A6J57_RS09930 (A6J57_09910) | - | 2105433..2106020 (+) | 588 | WP_005756557.1 | DUF4376 domain-containing protein | - |
| A6J57_RS09935 (A6J57_09915) | - | 2106010..2106267 (+) | 258 | WP_005756556.1 | hypothetical protein | - |
| A6J57_RS09940 (A6J57_09920) | - | 2106542..2107384 (-) | 843 | WP_005726500.1 | patatin family protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16787.65 Da Isoelectric Point: 7.9778
>NTDB_id=222282 A6J57_RS09575 WP_005756690.1 2050808..2051257(-) (ssb) [Pasteurella multocida strain FDAARGOS_218]
MAGVNRVIILGNLGNDPDVRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQPQQAPAPQNNAYANAKAGKPVQQADSFEENSIPF
MAGVNRVIILGNLGNDPDVRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQPQQAPAPQNNAYANAKAGKPVQQADSFEENSIPF
Nucleotide
Download Length: 450 bp
>NTDB_id=222282 A6J57_RS09575 WP_005756690.1 2050808..2051257(-) (ssb) [Pasteurella multocida strain FDAARGOS_218]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAACGATCCTGATGTCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATCGACAAAAACACGAACGAGCGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAATATCTCAAGAAAGGCTCAAAAGTGTATGTAGAAGGA
CGTTTAAAAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAACCGCAGCAAGCACCAGCACCACAAAACAATGCTTATGCCAATGCGAAAGCTGGAA
AGCCAGTGCAGCAAGCAGACAGCTTTGAAGAAAATAGTATTCCGTTCTGA
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAACGATCCTGATGTCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATCGACAAAAACACGAACGAGCGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAATATCTCAAGAAAGGCTCAAAAGTGTATGTAGAAGGA
CGTTTAAAAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAACCGCAGCAAGCACCAGCACCACAAAACAATGCTTATGCCAATGCGAAAGCTGGAA
AGCCAGTGCAGCAAGCAGACAGCTTTGAAGAAAATAGTATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.431 |
100 |
0.758 |
| ssb | Vibrio cholerae strain A1552 |
52.667 |
100 |
0.53 |
| ssb | Neisseria gonorrhoeae MS11 |
45.652 |
92.617 |
0.423 |
| ssb | Neisseria meningitidis MC58 |
45.652 |
92.617 |
0.423 |