Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A6J57_RS06965 Genome accession   NZ_CP020405
Coordinates   1472830..1474041 (+) Length   403 a.a.
NCBI ID   WP_005755881.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_218     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467830..1479041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J57_RS06940 (A6J57_06925) - 1468306..1469100 (-) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  A6J57_RS06945 (A6J57_06930) rppH 1469103..1469699 (-) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  A6J57_RS06950 (A6J57_06935) ampD 1470285..1470851 (-) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  A6J57_RS06955 (A6J57_06940) pilA 1471011..1471445 (+) 435 WP_005741096.1 prepilin peptidase-dependent pilin Machinery gene
  A6J57_RS06960 (A6J57_06945) pilB 1471445..1472830 (+) 1386 WP_005755879.1 GspE/PulE family protein Machinery gene
  A6J57_RS06965 (A6J57_06950) pilC 1472830..1474041 (+) 1212 WP_005755881.1 type II secretion system F family protein Machinery gene
  A6J57_RS06970 (A6J57_06955) - 1474041..1474763 (+) 723 WP_005755882.1 A24 family peptidase -
  A6J57_RS06975 (A6J57_06960) coaE 1474778..1475398 (+) 621 WP_005751078.1 dephospho-CoA kinase -
  A6J57_RS06980 (A6J57_06965) yacG 1475409..1475612 (+) 204 WP_005755884.1 DNA gyrase inhibitor YacG -
  A6J57_RS06985 (A6J57_06970) - 1475612..1475881 (+) 270 WP_005755886.1 GNAT family N-acetyltransferase -
  A6J57_RS06990 (A6J57_06975) - 1476330..1477703 (+) 1374 WP_005722571.1 sodium:alanine symporter family protein -
  A6J57_RS06995 (A6J57_06980) raiA 1477948..1478265 (+) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46109.06 Da        Isoelectric Point: 9.8732

>NTDB_id=222280 A6J57_RS06965 WP_005755881.1 1472830..1474041(+) (pilC) [Pasteurella multocida strain FDAARGOS_218]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLQLVCAQLAKQRQQSLGLRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLLLNARQRVGLY
RLKNCLLHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIAQGYR
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=222280 A6J57_RS06965 WP_005755881.1 1472830..1474041(+) (pilC) [Pasteurella multocida strain FDAARGOS_218]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGAGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACCGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACAGCTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGGGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGCTGTTAAATGCGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCCTTCCAATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGAGCTTACCGAGATGCGACTGGCTGAAGAAGTACAGTTAATGTTAAAGGGGATTGCTCAAGGTTATAGG
TTTTCTGAGGTTATCGGCTCTAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.148

100

0.484
  pilC Haemophilus influenzae 86-028NP

47.901

100

0.481
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395

Multiple sequence alignment