Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C2H94_RS19410 Genome accession   NZ_CP026034
Coordinates   3696179..3696610 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PK5_52     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691179..3701610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS19390 (C2H94_19320) spoVS 3691741..3692001 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  C2H94_RS19395 (C2H94_19325) tdh 3692266..3693309 (+) 1044 WP_072175701.1 L-threonine 3-dehydrogenase -
  C2H94_RS19400 (C2H94_19330) kbl 3693322..3694500 (+) 1179 WP_072175700.1 glycine C-acetyltransferase -
  C2H94_RS19405 (C2H94_19335) miaB 3694648..3696177 (+) 1530 WP_072175699.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C2H94_RS19410 (C2H94_19340) ymcA 3696179..3696610 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C2H94_RS19415 (C2H94_19345) cotE 3696872..3697417 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  C2H94_RS19420 (C2H94_19350) hexA 3697550..3700126 (+) 2577 WP_064671396.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=222280 C2H94_RS19410 WP_003231834.1 3696179..3696610(+) (ymcA) [Bacillus subtilis strain PK5_52]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=222280 C2H94_RS19410 WP_003231834.1 3696179..3696610(+) (ymcA) [Bacillus subtilis strain PK5_52]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment