Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A6J57_RS06195 | Genome accession | NZ_CP020405 |
| Coordinates | 1282660..1283160 (-) | Length | 166 a.a. |
| NCBI ID | WP_005725039.1 | Uniprot ID | A0A379BD60 |
| Organism | Pasteurella multocida strain FDAARGOS_218 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1277660..1288160
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J57_RS06155 (A6J57_06140) | ybeD | 1278175..1278471 (+) | 297 | WP_005719420.1 | DUF493 family protein YbeD | - |
| A6J57_RS06160 (A6J57_06145) | lipB | 1278478..1279134 (+) | 657 | WP_005725032.1 | lipoyl(octanoyl) transferase LipB | - |
| A6J57_RS06165 (A6J57_06150) | lipA | 1279199..1280161 (+) | 963 | WP_005719422.1 | lipoyl synthase | - |
| A6J57_RS06170 (A6J57_06155) | - | 1280237..1280656 (-) | 420 | WP_005719426.1 | DUF417 family protein | - |
| A6J57_RS06185 (A6J57_06170) | folD | 1281299..1282153 (+) | 855 | WP_005725034.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| A6J57_RS06195 (A6J57_06180) | ssb | 1282660..1283160 (-) | 501 | WP_005725039.1 | single-stranded DNA-binding protein | Machinery gene |
| A6J57_RS06200 (A6J57_06185) | uvrA | 1283332..1286163 (+) | 2832 | WP_005758141.1 | excinuclease ABC subunit UvrA | - |
| A6J57_RS06205 (A6J57_06190) | sodC | 1286234..1286794 (+) | 561 | WP_005725042.1 | superoxide dismutase family protein | - |
| A6J57_RS06210 (A6J57_06195) | rlmB | 1286879..1287616 (-) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18657.68 Da Isoelectric Point: 5.3353
>NTDB_id=222273 A6J57_RS06195 WP_005725039.1 1282660..1283160(-) (ssb) [Pasteurella multocida strain FDAARGOS_218]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=222273 A6J57_RS06195 WP_005725039.1 1282660..1283160(-) (ssb) [Pasteurella multocida strain FDAARGOS_218]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
69.231 |
100 |
0.759 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |