Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A6J55_RS08395 | Genome accession | NZ_CP020403 |
| Coordinates | 1752234..1752734 (-) | Length | 166 a.a. |
| NCBI ID | WP_005725039.1 | Uniprot ID | A0A379BD60 |
| Organism | Pasteurella multocida strain FDAARGOS_216 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1705863..1759594 | 1752234..1752734 | within | 0 |
Gene organization within MGE regions
Location: 1705863..1759594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J55_RS08085 (A6J55_08085) | - | 1705863..1706747 (+) | 885 | WP_005755551.1 | septal ring lytic transglycosylase RlpA family protein | - |
| A6J55_RS08090 (A6J55_08090) | - | 1706774..1707958 (+) | 1185 | WP_005752389.1 | serine hydrolase | - |
| A6J55_RS08095 (A6J55_08095) | ybeD | 1708061..1708357 (+) | 297 | WP_005719420.1 | DUF493 family protein YbeD | - |
| A6J55_RS08100 (A6J55_08100) | lipB | 1708364..1709020 (+) | 657 | WP_005755554.1 | lipoyl(octanoyl) transferase LipB | - |
| A6J55_RS08105 (A6J55_08105) | lipA | 1709085..1710047 (+) | 963 | WP_005755556.1 | lipoyl synthase | - |
| A6J55_RS08110 (A6J55_08110) | - | 1710125..1710544 (-) | 420 | WP_005719426.1 | DUF417 family protein | - |
| A6J55_RS08115 (A6J55_08115) | - | 1710847..1711692 (-) | 846 | WP_005755558.1 | hypothetical protein | - |
| A6J55_RS08120 (A6J55_08120) | - | 1711844..1712104 (-) | 261 | WP_005755559.1 | Gp49 family protein | - |
| A6J55_RS08125 (A6J55_08125) | - | 1712170..1714971 (-) | 2802 | WP_005755561.1 | phage tail protein | - |
| A6J55_RS08130 (A6J55_08130) | - | 1714971..1715171 (-) | 201 | WP_005755563.1 | hypothetical protein | - |
| A6J55_RS08135 (A6J55_08135) | - | 1715175..1715426 (-) | 252 | WP_005755565.1 | hypothetical protein | - |
| A6J55_RS08140 (A6J55_08140) | - | 1715443..1716252 (-) | 810 | WP_005755567.1 | phage BR0599 family protein | - |
| A6J55_RS08145 (A6J55_08145) | - | 1716277..1717956 (-) | 1680 | WP_005755569.1 | hypothetical protein | - |
| A6J55_RS08150 (A6J55_08150) | - | 1717964..1718926 (-) | 963 | WP_005755570.1 | hypothetical protein | - |
| A6J55_RS08155 (A6J55_08155) | - | 1718928..1719920 (-) | 993 | WP_005755572.1 | hypothetical protein | - |
| A6J55_RS08160 (A6J55_08160) | - | 1719931..1723269 (-) | 3339 | WP_005755574.1 | tape measure protein | - |
| A6J55_RS08165 (A6J55_08165) | - | 1723282..1723497 (+) | 216 | WP_005755576.1 | hypothetical protein | - |
| A6J55_RS08175 (A6J55_08175) | - | 1723708..1724133 (-) | 426 | WP_005755578.1 | DUF6631 family protein | - |
| A6J55_RS08180 (A6J55_08180) | - | 1724194..1724940 (-) | 747 | WP_005755580.1 | hypothetical protein | - |
| A6J55_RS08185 (A6J55_08185) | - | 1724933..1725193 (-) | 261 | WP_005755582.1 | hypothetical protein | - |
| A6J55_RS08190 (A6J55_08190) | - | 1725190..1725636 (-) | 447 | WP_005755583.1 | hypothetical protein | - |
| A6J55_RS08195 (A6J55_08195) | - | 1725636..1726142 (-) | 507 | WP_005755584.1 | gp436 family protein | - |
| A6J55_RS08200 (A6J55_08200) | - | 1726152..1727075 (-) | 924 | WP_005755585.1 | hypothetical protein | - |
| A6J55_RS08205 (A6J55_08205) | - | 1727137..1727502 (-) | 366 | WP_005755586.1 | capsid cement protein | - |
| A6J55_RS08210 (A6J55_08210) | - | 1727499..1728500 (-) | 1002 | WP_005755587.1 | hypothetical protein | - |
| A6J55_RS08215 (A6J55_08215) | - | 1728718..1729218 (-) | 501 | WP_005755588.1 | phage virion morphogenesis protein | - |
| A6J55_RS08220 (A6J55_08220) | - | 1729316..1730554 (-) | 1239 | WP_005755589.1 | PBECR2 nuclease fold domain-containing protein | - |
| A6J55_RS08225 (A6J55_08225) | - | 1730538..1732061 (-) | 1524 | WP_005755590.1 | DUF935 domain-containing protein | - |
| A6J55_RS08230 (A6J55_08230) | - | 1732064..1733632 (-) | 1569 | WP_005755591.1 | terminase large subunit domain-containing protein | - |
| A6J55_RS08235 (A6J55_08235) | - | 1733632..1734174 (-) | 543 | WP_005755592.1 | DUF3486 family protein | - |
| A6J55_RS08240 (A6J55_08240) | - | 1734186..1734491 (-) | 306 | WP_005755593.1 | hypothetical protein | - |
| A6J55_RS08245 (A6J55_08245) | - | 1734493..1734843 (-) | 351 | WP_005755594.1 | hypothetical protein | - |
| A6J55_RS10845 | - | 1734940..1735383 (-) | 444 | WP_192940804.1 | hypothetical protein | - |
| A6J55_RS08255 (A6J55_08255) | - | 1735374..1735970 (-) | 597 | WP_005755599.1 | transglycosylase SLT domain-containing protein | - |
| A6J55_RS08260 (A6J55_08260) | - | 1735972..1736343 (-) | 372 | WP_005755602.1 | putative holin | - |
| A6J55_RS08265 (A6J55_08265) | - | 1736563..1737741 (-) | 1179 | WP_005755605.1 | hypothetical protein | - |
| A6J55_RS08270 (A6J55_08270) | - | 1737741..1738709 (-) | 969 | WP_005755607.1 | nucleoid-associated protein | - |
| A6J55_RS08275 (A6J55_08275) | - | 1738848..1739093 (-) | 246 | WP_005755610.1 | hypothetical protein | - |
| A6J55_RS08280 (A6J55_08280) | - | 1739151..1739741 (-) | 591 | WP_005755613.1 | hypothetical protein | - |
| A6J55_RS08285 (A6J55_08285) | - | 1739754..1740281 (-) | 528 | WP_032851711.1 | hypothetical protein | - |
| A6J55_RS08290 (A6J55_08290) | - | 1740312..1740722 (-) | 411 | WP_005755617.1 | helix-turn-helix domain-containing protein | - |
| A6J55_RS10850 | - | 1740899..1741126 (-) | 228 | WP_025248436.1 | hypothetical protein | - |
| A6J55_RS08295 (A6J55_08295) | - | 1741191..1741427 (+) | 237 | WP_005755620.1 | DNA-binding protein | - |
| A6J55_RS08300 (A6J55_08300) | - | 1741507..1741692 (+) | 186 | WP_005755622.1 | hypothetical protein | - |
| A6J55_RS08305 (A6J55_08305) | - | 1741705..1742019 (+) | 315 | WP_005755623.1 | hypothetical protein | - |
| A6J55_RS08310 (A6J55_08310) | - | 1742030..1742974 (+) | 945 | WP_005755624.1 | hypothetical protein | - |
| A6J55_RS08315 (A6J55_08315) | - | 1742986..1744755 (+) | 1770 | WP_005755626.1 | DDE-type integrase/transposase/recombinase | - |
| A6J55_RS08320 (A6J55_08320) | - | 1744767..1745945 (+) | 1179 | WP_005755628.1 | AAA family ATPase | - |
| A6J55_RS08325 (A6J55_08325) | - | 1745948..1746271 (+) | 324 | WP_005755630.1 | hypothetical protein | - |
| A6J55_RS08330 (A6J55_08330) | - | 1746281..1746502 (+) | 222 | WP_005755632.1 | hypothetical protein | - |
| A6J55_RS08335 (A6J55_08335) | - | 1746477..1746731 (+) | 255 | WP_032851712.1 | hypothetical protein | - |
| A6J55_RS08340 (A6J55_08340) | - | 1746751..1747371 (+) | 621 | WP_005755634.1 | DUF3164 family protein | - |
| A6J55_RS10855 | - | 1747373..1747540 (+) | 168 | WP_005755636.1 | hypothetical protein | - |
| A6J55_RS08345 (A6J55_08345) | - | 1747541..1747768 (+) | 228 | WP_005755637.1 | hypothetical protein | - |
| A6J55_RS08350 (A6J55_08350) | - | 1747815..1748375 (+) | 561 | WP_005755639.1 | DUF5420 family protein | - |
| A6J55_RS08355 (A6J55_08355) | - | 1748377..1748676 (+) | 300 | WP_005755641.1 | hypothetical protein | - |
| A6J55_RS08360 (A6J55_08360) | - | 1748673..1749233 (+) | 561 | WP_005755643.1 | YfbR-like 5'-deoxynucleotidase | - |
| A6J55_RS08365 (A6J55_08365) | - | 1749309..1749773 (+) | 465 | WP_032851747.1 | gp16 family protein | - |
| A6J55_RS08370 (A6J55_08370) | - | 1749773..1750117 (+) | 345 | WP_005755647.1 | Mor transcription activator family protein | - |
| A6J55_RS08385 (A6J55_08385) | folD | 1750874..1751728 (+) | 855 | WP_005752391.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| A6J55_RS08395 (A6J55_08395) | ssb | 1752234..1752734 (-) | 501 | WP_005725039.1 | single-stranded DNA-binding protein | Machinery gene |
| A6J55_RS08400 (A6J55_08400) | uvrA | 1752906..1755737 (+) | 2832 | WP_005755649.1 | excinuclease ABC subunit UvrA | - |
| A6J55_RS08405 (A6J55_08405) | sodC | 1755808..1756368 (+) | 561 | WP_005725042.1 | superoxide dismutase family protein | - |
| A6J55_RS08410 (A6J55_08410) | rlmB | 1756454..1757191 (-) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| A6J55_RS08415 (A6J55_08415) | rnr | 1757192..1759594 (-) | 2403 | WP_005752404.1 | ribonuclease R | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18657.68 Da Isoelectric Point: 5.3353
>NTDB_id=222253 A6J55_RS08395 WP_005725039.1 1752234..1752734(-) (ssb) [Pasteurella multocida strain FDAARGOS_216]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=222253 A6J55_RS08395 WP_005725039.1 1752234..1752734(-) (ssb) [Pasteurella multocida strain FDAARGOS_216]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTCTAA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
69.231 |
100 |
0.759 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |