Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J54_RS06275 Genome accession   NZ_CP020402
Coordinates   1070925..1071251 (+) Length   108 a.a.
NCBI ID   WP_080542063.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1069848..1070855 1070925..1071251 flank 70


Gene organization within MGE regions


Location: 1069848..1071251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS06270 (A6J54_06070) - 1069848..1070855 (-) 1008 WP_080542062.1 IS5 family transposase -
  A6J54_RS06275 (A6J54_06075) comE 1070925..1071251 (+) 327 WP_080542063.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11262.45 Da        Isoelectric Point: 10.5346

>NTDB_id=222214 A6J54_RS06275 WP_080542063.1 1070925..1071251(+) (comE) [Neisseria meningitidis strain FDAARGOS_215]
MFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAV
LAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=222214 A6J54_RS06275 WP_080542063.1 1070925..1071251(+) (comE) [Neisseria meningitidis strain FDAARGOS_215]
TTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCT
TGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCA
TTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGTATCGGCCCTGCGGTG
CTGGCGAAGCTGAAGGATCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGCCCCGGCAAAACCGGTGCTGCCCGCGGATAA
AAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(29-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

75

0.389
  comEA Vibrio campbellii strain DS40M4

41.935

86.111

0.361

Multiple sequence alignment