Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C2H94_RS03390 Genome accession   NZ_CP026034
Coordinates   575657..576352 (-) Length   231 a.a.
NCBI ID   WP_021480240.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570657..581352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS03365 (C2H94_03315) minD 571593..572399 (-) 807 WP_042975118.1 septum site-determining protein MinD -
  C2H94_RS03370 (C2H94_03320) minC 572401..573081 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  C2H94_RS03375 (C2H94_03325) mreD 573134..573652 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  C2H94_RS03380 (C2H94_03330) mreC 573649..574521 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  C2H94_RS03385 (C2H94_03335) mreB 574552..575565 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H94_RS03390 (C2H94_03340) ysxA/radC 575657..576352 (-) 696 WP_021480240.1 DNA repair protein RadC Machinery gene
  C2H94_RS03395 (C2H94_03345) maf 576389..576958 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C2H94_RS03400 (C2H94_03350) spoIIB 577111..578109 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  C2H94_RS03405 (C2H94_03355) comC 578243..578989 (-) 747 WP_072175591.1 A24 family peptidase Machinery gene
  C2H94_RS03410 (C2H94_03360) folC 579129..580421 (-) 1293 WP_072175590.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26137.47 Da        Isoelectric Point: 7.9141

>NTDB_id=222165 C2H94_RS03390 WP_021480240.1 575657..576352(-) (ysxA/radC) [Bacillus subtilis strain PK5_52]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=222165 C2H94_RS03390 WP_021480240.1 575657..576352(-) (ysxA/radC) [Bacillus subtilis strain PK5_52]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment