Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J53_RS00565 Genome accession   NZ_CP020401
Coordinates   90130..90456 (-) Length   108 a.a.
NCBI ID   WP_079870814.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 90526..91533 90130..90456 flank 70


Gene organization within MGE regions


Location: 90130..91533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS00565 (A6J53_00555) comE 90130..90456 (-) 327 WP_079870814.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J53_RS00570 (A6J53_00560) - 90526..91533 (+) 1008 WP_082301520.1 IS5 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11232.47 Da        Isoelectric Point: 10.6503

>NTDB_id=222145 A6J53_RS00565 WP_079870814.1 90130..90456(-) (comE) [Neisseria meningitidis strain FDAARGOS_214]
MFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAV
LAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=222145 A6J53_RS00565 WP_079870814.1 90130..90456(-) (comE) [Neisseria meningitidis strain FDAARGOS_214]
TTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCT
TGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCA
TTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTG
CTGGCGAAGCTGAAGGATCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAA
AAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(29-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

75

0.389
  comEA Vibrio campbellii strain DS40M4

41.935

86.111

0.361

Multiple sequence alignment