Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C2H91_RS17035 Genome accession   NZ_CP026030
Coordinates   3429639..3430334 (+) Length   231 a.a.
NCBI ID   WP_021480240.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3424639..3435334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS17015 (C2H91_17060) folC 3425570..3426862 (+) 1293 WP_072175590.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C2H91_RS17020 (C2H91_17065) comC 3427002..3427748 (+) 747 WP_072175591.1 A24 family peptidase Machinery gene
  C2H91_RS17025 (C2H91_17070) spoIIB 3427882..3428880 (+) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  C2H91_RS17030 (C2H91_17075) maf 3429033..3429602 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C2H91_RS17035 (C2H91_17080) ysxA/radC 3429639..3430334 (+) 696 WP_021480240.1 DNA repair protein RadC Machinery gene
  C2H91_RS17040 (C2H91_17085) mreB 3430426..3431439 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H91_RS17045 (C2H91_17090) mreC 3431470..3432342 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  C2H91_RS17050 (C2H91_17095) mreD 3432339..3432857 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  C2H91_RS17055 (C2H91_17100) minC 3432910..3433590 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  C2H91_RS17060 (C2H91_17105) minD 3433592..3434398 (+) 807 WP_249850919.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26137.47 Da        Isoelectric Point: 7.9141

>NTDB_id=222105 C2H91_RS17035 WP_021480240.1 3429639..3430334(+) (ysxA/radC) [Bacillus subtilis strain PK3_9]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=222105 C2H91_RS17035 WP_021480240.1 3429639..3430334(+) (ysxA/radC) [Bacillus subtilis strain PK3_9]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424