Detailed information NTG0221074

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BVH74_RS00595
• Genome accession: NZ_CP020100
• Coordinates: 139306..140649 (+)
• Length: 447 a.a.
• NCBI ID: WP_080048208.1
• Uniprot ID: A0A1V0B0Q6
• Organism: Halopseudomonas phragmitis strain S-6-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 134306..145649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVH74_RS00575 (BVH74_00575)	-	134632..135624 (+)	993	WP_080048202.1	outer membrane protein assembly factor BamD	-
BVH74_RS00580 (BVH74_00580)	-	135692..137323 (-)	1632	WP_080048203.1	NAD+ synthase	-
BVH74_RS00585 (BVH74_00585)	-	137463..137699 (+)	237	WP_080048204.1	PP0621 family protein	-
BVH74_RS00590 (BVH74_00590)	pilS	137680..139272 (+)	1593	WP_080048207.1	PAS domain-containing sensor histidine kinase	Regulator
BVH74_RS00595 (BVH74_00595)	pilR	139306..140649 (+)	1344	WP_080048208.1	sigma-54 dependent transcriptional regulator	Regulator
BVH74_RS00600 (BVH74_00600)	thiO	140646..141755 (-)	1110	WP_080048209.1	glycine oxidase ThiO	-
BVH74_RS00605 (BVH74_00605)	mqo	141961..143448 (+)	1488	WP_080048211.1	malate dehydrogenase (quinone)	-
BVH74_RS00610 (BVH74_00610)	-	143439..144497 (-)	1059	WP_177344495.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49669.85 Da
• Isoelectric Point: 5.3643

>NTDB_id=221074 BVH74_RS00595 WP_080048208.1 139306..140649(+) (pilR) [Halopseudomonas phragmitis strain S-6-2]
MSSPLVLIIDDEPDILELLDMTLGRMNVRTRSATTQAEALTLLDQQQFQLCLTDMRLPDGDGLSIVRHIQLHCPQTPVAM
ITAYGSLDTAISALKAGAFDFLTKPVDLQRLRELVGSALRLSNPPAEDEQTDLDDPLLGISPPIQQLRRQIGKLARSQAP
IYISGESGTGKELVARRIHALGPRAEQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVADKPGLFQAAHAGTLFLDEVAD
LPMAMQVKLLRAIQEKAVRPVGTQQEESVDVRLLCATHKDLAAEVAAGRFRQDLFYRLNVIELHVPPLRQRREDIPLLCD
HILSRLAERNQRPQPRLSSACLERLCIYRFPGNVRELENVLERAFTLCEGNALQADDIHLSGGPSSGDDQPDLTQIDSLE
DYLDQIERQAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLED

Nucleotide

• Length: 1344 bp

>NTDB_id=221074 BVH74_RS00595 WP_080048208.1 139306..140649(+) (pilR) [Halopseudomonas phragmitis strain S-6-2]
ATGAGTAGTCCGCTGGTACTGATTATTGACGATGAGCCAGACATTCTCGAACTGCTCGACATGACGCTGGGGCGCATGAA
TGTCAGGACCCGCAGCGCGACCACTCAGGCCGAAGCACTCACACTGCTCGACCAGCAGCAGTTCCAGCTCTGTCTGACCG
ACATGCGCCTGCCCGACGGCGATGGACTGAGCATCGTTCGCCATATCCAGCTCCATTGCCCGCAGACCCCGGTCGCCATG
ATCACAGCTTACGGCAGCCTGGATACCGCCATCAGTGCACTCAAGGCCGGCGCCTTCGACTTTCTGACCAAGCCGGTGGA
CCTGCAGCGCCTGCGCGAACTGGTTGGCAGCGCACTGCGTCTGAGTAACCCGCCGGCCGAAGACGAACAAACCGATCTCG
ACGATCCACTGCTGGGGATATCTCCACCTATCCAGCAACTGCGCCGGCAAATCGGCAAACTGGCCCGCAGCCAAGCGCCG
ATCTATATCAGCGGCGAGTCCGGCACCGGCAAGGAACTGGTGGCCCGGCGCATTCACGCCCTTGGCCCACGAGCCGAGCA
GCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCTTCGGAACTGATGGAAAGCGAATTCTTTGGCCATCGCAAAGGCAGCT
TCAGTGGTGCCGTGGCCGACAAGCCCGGACTGTTCCAGGCCGCTCATGCCGGCACCCTGTTTCTCGACGAAGTTGCCGAC
CTGCCCATGGCCATGCAGGTCAAGCTGTTGCGGGCCATTCAGGAAAAGGCCGTGCGCCCGGTCGGCACCCAGCAGGAAGA
GTCGGTCGATGTGCGTCTGCTCTGCGCCACGCACAAGGATCTGGCCGCCGAAGTGGCCGCCGGGCGCTTTCGTCAGGATC
TGTTCTACCGGTTAAACGTCATTGAGCTGCATGTGCCGCCGCTGCGCCAGCGGCGTGAGGACATTCCACTGTTGTGTGAC
CACATCCTCAGCCGACTGGCCGAACGCAACCAGCGCCCACAGCCTCGCCTGAGTTCAGCCTGCCTCGAGCGGCTATGCAT
CTACCGCTTCCCCGGCAACGTCAGGGAGCTGGAAAATGTTCTGGAACGGGCCTTCACCCTGTGCGAGGGCAACGCCCTGC
AGGCCGATGACATTCATTTGAGTGGCGGCCCAAGCAGCGGTGACGACCAGCCGGACCTGACCCAGATCGACTCGCTGGAA
GACTATCTGGATCAGATCGAGCGCCAAGCTATTACCCAGGCCCTGGAAGAAACCCGCTGGAACAAGACCGCAGCAGCCAA
GCGCCTGGGCCTGACTTTCCGCTCACTGCGCTACCGACTGAAAAAACTCGGCCTGGAGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

3D structure

• AlphaFold DB: A0A1V0B0Q6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	72.036	100	0.72
pilR	Acinetobacter baumannii strain A118	49.241	100	0.508
luxO	Vibrio cholerae strain A1552	36.889	100	0.371