Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BVH74_RS00590 Genome accession   NZ_CP020100
Coordinates   137680..139272 (+) Length   530 a.a.
NCBI ID   WP_080048207.1    Uniprot ID   A0A1V0B085
Organism   Halopseudomonas phragmitis strain S-6-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 132680..144272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH74_RS00570 (BVH74_00570) rluD 133341..134300 (-) 960 WP_080048201.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BVH74_RS00575 (BVH74_00575) - 134632..135624 (+) 993 WP_080048202.1 outer membrane protein assembly factor BamD -
  BVH74_RS00580 (BVH74_00580) - 135692..137323 (-) 1632 WP_080048203.1 NAD+ synthase -
  BVH74_RS00585 (BVH74_00585) - 137463..137699 (+) 237 WP_080048204.1 PP0621 family protein -
  BVH74_RS00590 (BVH74_00590) pilS 137680..139272 (+) 1593 WP_080048207.1 PAS domain-containing sensor histidine kinase Regulator
  BVH74_RS00595 (BVH74_00595) pilR 139306..140649 (+) 1344 WP_080048208.1 sigma-54 dependent transcriptional regulator Regulator
  BVH74_RS00600 (BVH74_00600) thiO 140646..141755 (-) 1110 WP_080048209.1 glycine oxidase ThiO -
  BVH74_RS00605 (BVH74_00605) mqo 141961..143448 (+) 1488 WP_080048211.1 malate dehydrogenase (quinone) -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58852.94 Da        Isoelectric Point: 7.4015

>NTDB_id=221073 BVH74_RS00590 WP_080048207.1 137680..139272(+) (pilS) [Halopseudomonas phragmitis strain S-6-2]
MPLTSTERIDSQRPRILRLYNLYRVILGLGLALLTSNALRDGLLELNSPELYETVSWLYLIINLVIALILHQGHRNLYLF
ALAALDILLLGILFYAAGGAGSGLGNLLIIPVAVGNTLLHGRIGLLLAALASLLLIYLTFFLSLSHPGIGQNYLQVGVLG
CIFFAVALFVQRLSRRLSHSENLAKQQAASLASLERLNQLIIQRMRTGIVVVGTSSQVLQANEAAAQMLGKPIIRGMALD
SLAPQLAERLQHWQANPSRRSGSFRNHSGGVEIMANFKPLTGGEDNAVLVFLDDNTQVAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESDQIVEQDQRLTEIIQQHSQRMNRVIETVLELSRRRPSEPQLINLADWVRQCADDFRDAHPGT
DQLECQIQKDVIQTRMDPSQLSQVLGNLLDNALRYSGPPGTARTIWLRLYCHPETELPVLEVIDHGPGIAEEHLSHIFEP
FYTTERTGTGLGLYISRELCESNQARLEYQRLEPRGSCMRITFAHPKRLV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=221073 BVH74_RS00590 WP_080048207.1 137680..139272(+) (pilS) [Halopseudomonas phragmitis strain S-6-2]
ATGCCGCTGACCAGCACTGAGCGAATCGACTCGCAGCGACCGCGCATTCTCCGGCTTTACAATCTCTACCGGGTCATTCT
GGGCCTGGGGCTGGCGTTGCTGACCAGCAATGCGCTACGTGACGGACTGCTGGAGCTGAACAGCCCGGAGCTCTACGAAA
CCGTCAGCTGGCTGTACCTGATCATCAACCTGGTGATCGCGCTGATCCTGCACCAGGGCCATCGCAACCTGTACCTGTTC
GCCCTGGCGGCGCTCGACATTCTGCTGCTCGGCATTCTGTTCTATGCCGCCGGCGGCGCCGGCAGCGGGCTCGGCAACCT
GCTGATCATTCCAGTGGCCGTCGGCAACACCCTGCTGCATGGCCGGATCGGTCTATTGCTGGCGGCGTTGGCCAGCCTGT
TGCTGATCTATCTGACCTTTTTCCTCAGCCTGTCGCACCCCGGCATCGGCCAGAATTACCTGCAGGTCGGCGTACTGGGC
TGTATTTTCTTCGCCGTCGCACTGTTCGTTCAGCGCCTGAGCCGGCGCCTGTCGCATTCGGAAAACCTGGCCAAGCAGCA
GGCCGCCAGCCTGGCCAGCCTGGAGCGGCTCAACCAACTAATCATTCAGCGCATGCGCACCGGCATCGTGGTGGTCGGCA
CCAGCAGCCAGGTTCTGCAGGCCAACGAAGCCGCCGCGCAAATGCTCGGCAAACCGATCATTCGCGGCATGGCGTTGGAC
AGCCTGGCGCCACAACTAGCCGAACGCCTGCAACACTGGCAAGCCAACCCATCACGCCGCTCCGGGAGCTTTCGCAACCA
CAGCGGCGGCGTCGAGATCATGGCCAACTTCAAACCCCTGACCGGCGGAGAAGACAACGCCGTCCTGGTATTTCTTGACG
ACAACACCCAGGTGGCGCAGCAGGCCCAGCAACTCAAACTGGCATCGCTCGGCCGCCTGACCGCCAGCATCGCCCATGAA
ATCCGCAACCCACTGGGCGCGATCAGCCATGCCGCGCAACTGTTGCACGAGTCAGATCAGATCGTCGAACAGGACCAGCG
ACTGACCGAAATCATTCAGCAGCATTCGCAGCGCATGAACCGGGTGATCGAAACCGTGCTGGAACTGTCACGCCGACGCC
CCAGCGAGCCGCAACTGATCAACCTGGCAGACTGGGTCAGGCAGTGCGCCGACGACTTTCGCGATGCCCACCCAGGCACC
GACCAGCTTGAATGCCAGATTCAGAAGGATGTTATCCAGACTCGCATGGACCCCAGCCAGCTCAGCCAGGTACTCGGCAA
CCTGCTTGACAACGCTCTGCGCTACAGCGGCCCACCCGGCACTGCGCGGACCATCTGGCTAAGACTATACTGTCACCCTG
AGACCGAATTGCCGGTATTGGAAGTGATCGACCATGGCCCAGGCATCGCAGAAGAACACCTGAGTCACATTTTCGAGCCT
TTCTACACTACCGAACGTACCGGCACCGGCCTGGGCCTGTATATTTCCCGCGAACTGTGTGAAAGCAATCAGGCACGTCT
TGAATACCAGCGCCTGGAGCCCCGGGGAAGTTGTATGCGCATTACCTTCGCCCACCCCAAACGCCTGGTATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

PAS domain (PAS_8)

(201-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0B085

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

51.923

98.113

0.509

Multiple sequence alignment