Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4X03_RS07460 Genome accession   NZ_CP020085
Coordinates   1539048..1539590 (+) Length   180 a.a.
NCBI ID   WP_021113523.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1534048..1544590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS07450 - 1535453..1535833 (-) 381 WP_021109497.1 YacL family protein -
  B4X03_RS07455 uvrA 1535917..1538745 (-) 2829 WP_082259249.1 excinuclease ABC subunit UvrA -
  B4X03_RS07460 ssb 1539048..1539590 (+) 543 WP_021113523.1 single-stranded DNA-binding protein Machinery gene
  B4X03_RS07465 - 1539751..1541238 (-) 1488 WP_082259251.1 helicase HerA-like C-terminal domain-containing protein -
  B4X03_RS07470 rhlB 1541248..1542468 (-) 1221 WP_026916465.1 ATP-dependent RNA helicase RhlB -
  B4X03_RS07475 - 1542532..1542804 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  B4X03_RS07480 - 1542815..1543093 (-) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  B4X03_RS07485 argF 1543242..1544252 (+) 1011 WP_082259253.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19966.84 Da        Isoelectric Point: 4.9833

>NTDB_id=220970 B4X03_RS07460 WP_021113523.1 1539048..1539590(+) (ssb) [Glaesserella parasuis strain CL120103]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPVAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=220970 B4X03_RS07460 WP_021113523.1 1539048..1539590(+) (ssb) [Glaesserella parasuis strain CL120103]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGTGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

99.444

100

0.994
  ssb Vibrio cholerae strain A1552

51.648

100

0.522
  ssb Neisseria gonorrhoeae MS11

42.857

100

0.433
  ssb Neisseria meningitidis MC58

42.391

100

0.433

Multiple sequence alignment