Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | B5D85_RS08240 | Genome accession | NZ_CP020082 |
| Coordinates | 1561929..1562420 (-) | Length | 163 a.a. |
| NCBI ID | WP_023605268.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain STAB120304 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1556929..1567420
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B5D85_RS08225 (B5D85_08195) | - | 1559660..1560604 (+) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
| B5D85_RS08230 (B5D85_08200) | - | 1560737..1561393 (+) | 657 | WP_010922629.1 | DUF1129 domain-containing protein | - |
| B5D85_RS08235 (B5D85_08205) | rpsR | 1561526..1561765 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| B5D85_RS08240 (B5D85_08210) | ssb | 1561929..1562420 (-) | 492 | WP_023605268.1 | single-stranded DNA-binding protein | Machinery gene |
| B5D85_RS08245 (B5D85_08215) | rpsF | 1562442..1562732 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| B5D85_RS08250 (B5D85_08220) | - | 1562905..1563198 (-) | 294 | WP_002983113.1 | hypothetical protein | - |
| B5D85_RS08255 (B5D85_08225) | mutY | 1563366..1564520 (+) | 1155 | WP_002988276.1 | A/G-specific adenine glycosylase | - |
| B5D85_RS08260 (B5D85_08230) | - | 1564697..1565284 (+) | 588 | WP_076639280.1 | helix-turn-helix domain-containing protein | - |
| B5D85_RS08265 (B5D85_08235) | trxA | 1565336..1565668 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| B5D85_RS08270 (B5D85_08240) | - | 1565731..1566231 (-) | 501 | WP_161230218.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17993.81 Da Isoelectric Point: 4.8894
>NTDB_id=220932 B5D85_RS08240 WP_023605268.1 1561929..1562420(-) (ssb) [Streptococcus pyogenes strain STAB120304]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=220932 B5D85_RS08240 WP_023605268.1 1561929..1562420(-) (ssb) [Streptococcus pyogenes strain STAB120304]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACGCTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACGCTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |