Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   B5D85_RS01600 Genome accession   NZ_CP020082
Coordinates   294980..295666 (+) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB120304     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 289980..300666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D85_RS01575 (B5D85_01575) ktrB 290122..291498 (-) 1377 WP_164997041.1 potassium uptake transporter channel subunit KtrB -
  B5D85_RS01580 (B5D85_01580) rsmG 291583..292296 (-) 714 WP_023078972.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  B5D85_RS01585 (B5D85_01585) - 292446..293003 (+) 558 WP_014407314.1 LemA family protein -
  B5D85_RS01590 (B5D85_01590) htpX 293050..293946 (+) 897 WP_014407315.1 zinc metalloprotease HtpX -
  B5D85_RS01595 (B5D85_01595) - 294180..294713 (+) 534 WP_011054200.1 YceD family protein -
  B5D85_RS01600 (B5D85_01600) covR 294980..295666 (+) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  B5D85_RS01605 (B5D85_01605) covS 295672..297174 (+) 1503 WP_076639619.1 two-component system sensor histidine kinase CovS -
  B5D85_RS01610 (B5D85_01610) nrdR 297389..297883 (+) 495 WP_002985941.1 transcriptional regulator NrdR -
  B5D85_RS01615 (B5D85_01615) - 297867..299042 (+) 1176 WP_076639618.1 replication initiation and membrane attachment family protein -
  B5D85_RS01620 (B5D85_01620) dnaI 299043..299945 (+) 903 WP_020904907.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=220904 B5D85_RS01600 WP_002991052.1 294980..295666(+) (covR) [Streptococcus pyogenes strain STAB120304]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=220904 B5D85_RS01600 WP_002991052.1 294980..295666(+) (covR) [Streptococcus pyogenes strain STAB120304]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCCGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment