Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVH73_RS08900 Genome accession   NZ_CP020046
Coordinates   1913712..1914212 (-) Length   166 a.a.
NCBI ID   WP_079420478.1    Uniprot ID   -
Organism   Thiomonas intermedia strain ATCC 15466     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1908712..1919212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH73_RS08885 - 1908843..1909379 (-) 537 WP_079417942.1 hypothetical protein -
  BVH73_RS08890 - 1909499..1910869 (-) 1371 WP_079417944.1 restriction endonuclease subunit S -
  BVH73_RS08895 - 1910866..1913673 (-) 2808 WP_079417945.1 type I restriction-modification enzyme R subunit C-terminal domain-containing protein -
  BVH73_RS08900 ssb 1913712..1914212 (-) 501 WP_079420478.1 single-stranded DNA-binding protein Machinery gene
  BVH73_RS08905 - 1914311..1915573 (-) 1263 WP_245800303.1 MFS transporter -
  BVH73_RS08910 uvrA 1916013..1918898 (+) 2886 WP_079417948.1 excinuclease ABC subunit UvrA -
  BVH73_RS08915 - 1918960..1919205 (+) 246 WP_079417949.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18050.07 Da        Isoelectric Point: 5.4181

>NTDB_id=220675 BVH73_RS08900 WP_079420478.1 1913712..1914212(-) (ssb) [Thiomonas intermedia strain ATCC 15466]
MASVNKVILVGNLGRDPETRFAPSGAAICNITIATSRNWKDKASGEKREETEWHRVVFYDKLAEIAGEYLKKGRPVYVEG
RLKTRKWTDKDGIEKYTTEIIAEEMQLLGGREGGGGGGGADDDGYSRSREAESGRAPSRPAPSRAPAPAASKPASDFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=220675 BVH73_RS08900 WP_079420478.1 1913712..1914212(-) (ssb) [Thiomonas intermedia strain ATCC 15466]
ATGGCCTCCGTCAACAAAGTCATTCTCGTCGGCAATCTCGGCCGCGACCCCGAAACCCGCTTCGCCCCCAGCGGCGCCGC
CATCTGCAACATCACCATCGCCACATCGCGCAACTGGAAAGACAAGGCCAGCGGCGAAAAGCGCGAGGAAACCGAGTGGC
ACCGCGTGGTGTTCTACGACAAGCTCGCCGAAATCGCCGGGGAATACCTCAAGAAAGGCCGCCCCGTGTATGTGGAAGGC
CGCCTGAAAACCCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACCACCGAGATCATCGCCGAAGAGATGCAACT
GCTCGGCGGCCGTGAAGGCGGTGGCGGTGGTGGCGGCGCAGACGACGACGGCTACAGCCGCAGCCGCGAGGCCGAATCAG
GCCGCGCGCCCAGCCGCCCCGCCCCCAGCCGCGCCCCCGCCCCGGCCGCCAGCAAACCGGCGAGCGACTTCAGCGACATG
GACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.556

100

0.548
  ssb Neisseria gonorrhoeae MS11

50.279

100

0.542
  ssb Neisseria meningitidis MC58

49.162

100

0.53
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.518

Multiple sequence alignment