Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BVC89_RS06005 Genome accession   NZ_CP020038
Coordinates   1407361..1408428 (+) Length   355 a.a.
NCBI ID   WP_086930314.1    Uniprot ID   -
Organism   Agarilytica rhodophyticola strain 017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402361..1413428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVC89_RS05995 rpmE 1403994..1404206 (+) 213 WP_086930312.1 50S ribosomal protein L31 -
  BVC89_RS06000 - 1404426..1407167 (-) 2742 WP_216825098.1 penicillin-binding protein 1A -
  BVC89_RS06005 pilM 1407361..1408428 (+) 1068 WP_086930314.1 pilus assembly protein PilM Machinery gene
  BVC89_RS06010 - 1408430..1408996 (+) 567 WP_086930315.1 PilN domain-containing protein -
  BVC89_RS06015 - 1408989..1409606 (+) 618 WP_086930316.1 type 4a pilus biogenesis protein PilO -
  BVC89_RS06020 - 1409608..1410147 (+) 540 WP_086930317.1 pilus assembly protein PilP -
  BVC89_RS06025 pilQ 1410153..1412429 (+) 2277 WP_086934535.1 type IV pilus secretin PilQ -
  BVC89_RS06030 aroK 1412437..1412949 (+) 513 WP_086930318.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38694.95 Da        Isoelectric Point: 4.1686

>NTDB_id=220616 BVC89_RS06005 WP_086930314.1 1407361..1408428(+) (pilM) [Agarilytica rhodophyticola strain 017]
MGLLDILNKKQKPMLGLDISSTSVKMLEISRQGDSYRVENYAVKPLPANAVVEKNINDPEVVAQVVKSVVQSSRTKLKDS
AVAVAGSSVITKLIEMPGDLNEEAMELQISLEADQYIPYPLEEVAIDFDIQGVSDKNPDQVEVLLAACRRENVDTRASIL
EMADLSPKVVDVEAYTLERAFALVQEQFEDQEEQIVAVVDIGATMTTLSVLIDGKTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEPEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVASLEGLSGLIEEKLGTSVTVAN
PFANMSISSRVNAAMLANDSPSLMIATGLALRSFE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=220616 BVC89_RS06005 WP_086930314.1 1407361..1408428(+) (pilM) [Agarilytica rhodophyticola strain 017]
ATGGGCCTCCTAGATATTCTCAATAAAAAACAAAAGCCGATGCTTGGATTGGATATCAGTTCAACTTCCGTAAAGATGCT
TGAAATAAGTCGCCAAGGCGACAGTTATCGCGTTGAAAACTATGCGGTCAAGCCGCTGCCAGCCAATGCGGTTGTGGAAA
AAAACATCAATGACCCTGAAGTTGTCGCACAGGTCGTTAAGTCTGTGGTGCAATCATCTCGCACAAAGCTTAAAGATTCT
GCGGTAGCCGTAGCAGGTTCGTCAGTGATTACTAAATTAATTGAAATGCCTGGCGATCTCAACGAAGAGGCGATGGAATT
GCAGATTTCTTTGGAGGCGGATCAGTATATCCCTTACCCATTGGAAGAAGTGGCCATCGACTTTGACATCCAAGGCGTCT
CTGACAAAAATCCGGATCAAGTAGAGGTATTGCTCGCTGCTTGTCGAAGAGAGAACGTCGACACCCGAGCAAGTATTTTG
GAAATGGCTGATCTTTCTCCAAAAGTTGTGGATGTGGAAGCCTATACCCTAGAGCGAGCCTTCGCCCTCGTGCAAGAGCA
ATTTGAGGATCAAGAAGAGCAGATTGTCGCCGTGGTTGATATTGGTGCGACAATGACAACGCTAAGTGTGCTTATAGACG
GCAAAACTATCTATACTCGTGAACAATTATTTGGTGGCAAACAACTAACAGAAGAAATTCAGCGGCGTTATGGTTTGTCT
GCGGAGGAAGCTGGCTTGGCAAAAAAACAAGGCGGCCTACCTGACGATTATGAGCCAGAGGTGCTTGAGCCATTTAAAGA
TGCAGTGGTGCAACAAGTAACAAGATCTTTACAATTTTTCTTTTCATCAAGCCAATACAATGATGTGGATCATATTGTGT
TAGCCGGCGGTGTCGCTTCGCTTGAAGGTTTATCTGGTTTGATCGAAGAGAAATTGGGGACATCGGTAACGGTTGCTAAT
CCCTTTGCAAATATGTCAATTTCATCGCGTGTTAACGCAGCCATGTTGGCTAATGACTCTCCCTCGCTCATGATTGCGAC
AGGGTTAGCCTTAAGGAGCTTCGAATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

54.108

99.437

0.538
  comM Acinetobacter nosocomialis M2

54.108

99.437

0.538
  comM Acinetobacter baylyi ADP1

52.408

99.437

0.521
  pilM Legionella pneumophila strain ERS1305867

45.763

99.718

0.456

Multiple sequence alignment