Detailed information NTG0022058

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CJE_RS08175
• Genome accession: NC_003912
• Coordinates: 1546459..1547871 (-)
• Length: 470 a.a.
• NCBI ID: WP_011049986.1
• Uniprot ID: -
• Organism: Campylobacter jejuni RM1221
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1541459..1552871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJE_RS08150 (CJE1642)	-	1541783..1542547 (+)	765	WP_002855821.1	TSUP family transporter	-
CJE_RS08155 (CJE1643)	ctsF	1542540..1543721 (-)	1182	WP_002867247.1	type II secretion system F family protein	Machinery gene
CJE_RS08160 (CJE1644)	ctsE	1543718..1545277 (-)	1560	WP_002867246.1	GspE/PulE family protein	Machinery gene
CJE_RS08165 (CJE1645)	ctsX	1545267..1545854 (-)	588	WP_002867245.1	hypothetical protein	Machinery gene
CJE_RS08170 (CJE1646)	ctsP	1545858..1546466 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
CJE_RS08175 (CJE1647)	ctsD	1546459..1547871 (-)	1413	WP_011049986.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CJE_RS08180 (CJE1648)	ctsR	1547849..1548160 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
CJE_RS08185 (CJE1649)	nifJ	1548184..1551744 (-)	3561	WP_002877436.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CJE_RS08190 (CJE1650)	-	1551837..1552478 (-)	642	WP_002867242.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53122.71 Da
• Isoelectric Point: 6.6184

>NTDB_id=22058 CJE_RS08175 WP_011049986.1 1546459..1547871(-) (ctsD) [Campylobacter jejuni RM1221]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=22058 CJE_RS08175 WP_011049986.1 1546459..1547871(-) (ctsD) [Campylobacter jejuni RM1221]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGTGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.787	100	0.998