Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   CJE_RS08170 Genome accession   NC_003912
Coordinates   1545858..1546466 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni RM1221     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540858..1551466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJE_RS08145 (CJE1641) - 1541015..1541779 (+) 765 WP_011049985.1 TIGR02757 family protein -
  CJE_RS08150 (CJE1642) - 1541783..1542547 (+) 765 WP_002855821.1 TSUP family transporter -
  CJE_RS08155 (CJE1643) ctsF 1542540..1543721 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  CJE_RS08160 (CJE1644) ctsE 1543718..1545277 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  CJE_RS08165 (CJE1645) ctsX 1545267..1545854 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  CJE_RS08170 (CJE1646) ctsP 1545858..1546466 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJE_RS08175 (CJE1647) ctsD 1546459..1547871 (-) 1413 WP_011049986.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJE_RS08180 (CJE1648) ctsR 1547849..1548160 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=22057 CJE_RS08170 WP_002851464.1 1545858..1546466(-) (ctsP) [Campylobacter jejuni RM1221]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=22057 CJE_RS08170 WP_002851464.1 1545858..1546466(-) (ctsP) [Campylobacter jejuni RM1221]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment