Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CJE_RS08180 Genome accession   NC_003912
Coordinates   1547849..1548160 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni RM1221     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1542849..1553160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJE_RS08160 (CJE1644) ctsE 1543718..1545277 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  CJE_RS08165 (CJE1645) ctsX 1545267..1545854 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  CJE_RS08170 (CJE1646) ctsP 1545858..1546466 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJE_RS08175 (CJE1647) ctsD 1546459..1547871 (-) 1413 WP_011049986.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJE_RS08180 (CJE1648) ctsR 1547849..1548160 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CJE_RS08185 (CJE1649) nifJ 1548184..1551744 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CJE_RS08190 (CJE1650) - 1551837..1552478 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=22059 CJE_RS08180 WP_002855438.1 1547849..1548160(-) (ctsR) [Campylobacter jejuni RM1221]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=22059 CJE_RS08180 WP_002855438.1 1547849..1548160(-) (ctsR) [Campylobacter jejuni RM1221]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment