Detailed information NTG0220418

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXV92_RS08430
• Genome accession: NZ_CP025859
• Coordinates: 1694532..1695509 (-)
• Length: 325 a.a.
• NCBI ID: WP_020234034.1
• Uniprot ID: -
• Organism: Escherichia coli strain 504239
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1689532..1700509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXV92_RS08405	ygbN	1690186..1691550 (+)	1365	WP_000104429.1	GntP family transporter	-
CXV92_RS08410	-	1691590..1691826 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CXV92_RS08415	-	1691837..1693264 (-)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CXV92_RS08420	-	1693264..1693857 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CXV92_RS08425	-	1694004..1694411 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
CXV92_RS08430	rpoS	1694532..1695509 (-)	978	WP_020234034.1	RNA polymerase sigma factor RpoS	Regulator
CXV92_RS08435	nlpD	1695587..1696681 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXV92_RS08440	pcm	1696866..1697492 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXV92_RS08445	surE	1697486..1698247 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXV92_RS08450	truD	1698228..1699277 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CXV92_RS08455	ispF	1699274..1699753 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXV92_RS08460	ispD	1699753..1700463 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37429.27 Da
• Isoelectric Point: 4.5597

>NTDB_id=220418 CXV92_RS08430 WP_020234034.1 1694532..1695509(-) (rpoS) [Escherichia coli strain 504239]
MKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR
GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI
RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG
PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE
ALFRE

Nucleotide

• Length: 978 bp

>NTDB_id=220418 CXV92_RS08430 WP_020234034.1 1694532..1695509(-) (rpoS) [Escherichia coli strain 504239]
CTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGAAAAGGCCTTAGTAGA
AGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTGTGTTGGACGCGACTC
AGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCGCGTCGCGCACTGCGT
GGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCGCCGTTATGGCAATCG
TGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGTTTGACCCGGAACGTG
GTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAACCAAACCCGTACTATT
CGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCATAAGCTGGACCATGA
ACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTCGTCTTAACGAGCGCA
TTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGATGAAAAAGAGAACGGT
CCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAACGCCAAACAGCGTGA
AGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTGAAATTGGCCTCACCC
GTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA
GCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-83)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-243)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	99.385	0.726