Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BS21228_RS12150 Genome accession   NZ_CP020023
Coordinates   2262369..2262887 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ATCC 21228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2257369..2267887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS12125 (BS21228_12080) - 2257629..2258657 (+) 1029 WP_014481504.1 AAA family ATPase -
  BS21228_RS12130 (BS21228_12085) - 2258635..2259909 (+) 1275 WP_014481505.1 MFS transporter -
  BS21228_RS12135 (BS21228_12090) ccpB 2260829..2261203 (-) 375 Protein_2404 transcriptional regulator CcpB -
  BS21228_RS12140 (BS21228_12095) xth 2261263..2262021 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  BS21228_RS12145 (BS21228_12100) rpsR 2262086..2262325 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BS21228_RS12150 (BS21228_12105) ssbA 2262369..2262887 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BS21228_RS12155 (BS21228_12110) rpsF 2262928..2263215 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BS21228_RS12160 (BS21228_12115) ychF 2263326..2264426 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BS21228_RS12165 (BS21228_12120) yyaE 2264553..2266556 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  BS21228_RS12170 (BS21228_12125) yyzM 2266607..2266813 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=220341 BS21228_RS12150 WP_003219228.1 2262369..2262887(-) (ssbA) [Bacillus subtilis strain ATCC 21228]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=220341 BS21228_RS12150 WP_003219228.1 2262369..2262887(-) (ssbA) [Bacillus subtilis strain ATCC 21228]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment