Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PP40703_RS05445 | Genome accession | NZ_CP020018 |
| Coordinates | 1090308..1090835 (+) | Length | 175 a.a. |
| NCBI ID | WP_002833866.1 | Uniprot ID | A0A0R2H8I2 |
| Organism | Pediococcus pentosaceus strain KCCM 40703 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1085308..1095835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP40703_RS05435 (PP40703_05410) | gyrA | 1087261..1089741 (+) | 2481 | WP_269668170.1 | DNA gyrase subunit A | - |
| PP40703_RS05440 (PP40703_05415) | rpsF | 1089988..1090272 (+) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| PP40703_RS05445 (PP40703_05420) | ssb | 1090308..1090835 (+) | 528 | WP_002833866.1 | single-stranded DNA-binding protein | Machinery gene |
| PP40703_RS05450 (PP40703_05425) | rpsR | 1090859..1091095 (+) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| PP40703_RS05455 (PP40703_05430) | - | 1091298..1093298 (+) | 2001 | WP_002833868.1 | DHH family phosphoesterase | - |
| PP40703_RS05460 (PP40703_05435) | rplI | 1093304..1093756 (+) | 453 | WP_023439730.1 | 50S ribosomal protein L9 | - |
| PP40703_RS05465 (PP40703_05440) | dnaB | 1093805..1095202 (+) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19144.68 Da Isoelectric Point: 4.7512
>NTDB_id=220168 PP40703_RS05445 WP_002833866.1 1090308..1090835(+) (ssb) [Pediococcus pentosaceus strain KCCM 40703]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=220168 PP40703_RS05445 WP_002833866.1 1090308..1090835(+) (ssb) [Pediococcus pentosaceus strain KCCM 40703]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |