Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OTEC02_RS01650 Genome accession   NZ_CP020015
Coordinates   343245..344054 (+) Length   269 a.a.
NCBI ID   WP_081172672.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338245..349054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS18900 - 338802..338957 (-) 156 WP_014207816.1 hypothetical protein -
  OTEC02_RS01620 (OTEC02_01620) rpoZ 338996..339274 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OTEC02_RS01625 (OTEC02_01625) gmk 339347..339976 (-) 630 WP_002116973.1 guanylate kinase -
  OTEC02_RS01630 (OTEC02_01630) ispH 340099..341048 (+) 950 Protein_307 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OTEC02_RS01635 (OTEC02_01635) fimU 341220..341693 (+) 474 WP_081172670.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OTEC02_RS01640 (OTEC02_01640) pilV 341687..342247 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  OTEC02_RS01645 (OTEC02_01645) pilW 342247..343248 (+) 1002 WP_081172671.1 PilW family protein Machinery gene
  OTEC02_RS01650 (OTEC02_01650) pilX 343245..344054 (+) 810 WP_081172672.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OTEC02_RS01655 (OTEC02_01655) pilY1 344066..347920 (+) 3855 WP_213033135.1 PilC/PilY family type IV pilus protein Machinery gene
  OTEC02_RS01660 (OTEC02_01660) pilY2 347931..348413 (+) 483 WP_062850207.1 type IV pilin protein Machinery gene
  OTEC02_RS01665 (OTEC02_01665) pilE 348410..348835 (+) 426 WP_062850206.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28514.43 Da        Isoelectric Point: 7.2645

>NTDB_id=220080 OTEC02_RS01650 WP_081172672.1 343245..344054(+) (pilX) [Acinetobacter lactucae strain OTEC-02]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSMQRIRVITTAFLPAYASASIEILQRDCLSTSSAKISDNFDTALAAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=220080 OTEC02_RS01650 WP_081172672.1 343245..344054(+) (pilX) [Acinetobacter lactucae strain OTEC-02]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTCTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACCAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAACCCAGGTGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCCGTAAGTATTCCAACAGAT
GCTGCTAGCGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTCCCTAAAAGCATGTT
GTCTATGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTGCCTCTATTGAAATTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAGCGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAATGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment