Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | OTEC02_RS01635 | Genome accession | NZ_CP020015 |
| Coordinates | 341220..341693 (+) | Length | 157 a.a. |
| NCBI ID | WP_081172670.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae strain OTEC-02 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 336220..346693
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OTEC02_RS01615 (OTEC02_01615) | - | 336681..338786 (-) | 2106 | WP_057105808.1 | RelA/SpoT family protein | - |
| OTEC02_RS18900 | - | 338802..338957 (-) | 156 | WP_014207816.1 | hypothetical protein | - |
| OTEC02_RS01620 (OTEC02_01620) | rpoZ | 338996..339274 (-) | 279 | WP_002116990.1 | DNA-directed RNA polymerase subunit omega | - |
| OTEC02_RS01625 (OTEC02_01625) | gmk | 339347..339976 (-) | 630 | WP_002116973.1 | guanylate kinase | - |
| OTEC02_RS01630 (OTEC02_01630) | ispH | 340099..341048 (+) | 950 | Protein_307 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| OTEC02_RS01635 (OTEC02_01635) | fimU | 341220..341693 (+) | 474 | WP_081172670.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| OTEC02_RS01640 (OTEC02_01640) | pilV | 341687..342247 (+) | 561 | WP_079748555.1 | type IV pilus modification protein PilV | Machinery gene |
| OTEC02_RS01645 (OTEC02_01645) | pilW | 342247..343248 (+) | 1002 | WP_081172671.1 | PilW family protein | Machinery gene |
| OTEC02_RS01650 (OTEC02_01650) | pilX | 343245..344054 (+) | 810 | WP_081172672.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16926.49 Da Isoelectric Point: 8.5281
>NTDB_id=220077 OTEC02_RS01635 WP_081172670.1 341220..341693(+) (fimU) [Acinetobacter lactucae strain OTEC-02]
MRGIIPQDGFTLVELMVTIAVMAIIAMMATPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKTNKKKILILTKLGTLIFKAEETC
MRGIIPQDGFTLVELMVTIAVMAIIAMMATPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKTNKKKILILTKLGTLIFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=220077 OTEC02_RS01635 WP_081172670.1 341220..341693(+) (fimU) [Acinetobacter lactucae strain OTEC-02]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCCACGCCATCTATGTCCAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCCACGCCATCTATGTCCAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
86.624 |
100 |
0.866 |