Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   OTEC02_RS01645 Genome accession   NZ_CP020015
Coordinates   342247..343248 (+) Length   333 a.a.
NCBI ID   WP_081172671.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337247..348248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS18900 - 338802..338957 (-) 156 WP_014207816.1 hypothetical protein -
  OTEC02_RS01620 (OTEC02_01620) rpoZ 338996..339274 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OTEC02_RS01625 (OTEC02_01625) gmk 339347..339976 (-) 630 WP_002116973.1 guanylate kinase -
  OTEC02_RS01630 (OTEC02_01630) ispH 340099..341048 (+) 950 Protein_307 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OTEC02_RS01635 (OTEC02_01635) fimU 341220..341693 (+) 474 WP_081172670.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OTEC02_RS01640 (OTEC02_01640) pilV 341687..342247 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  OTEC02_RS01645 (OTEC02_01645) pilW 342247..343248 (+) 1002 WP_081172671.1 PilW family protein Machinery gene
  OTEC02_RS01650 (OTEC02_01650) pilX 343245..344054 (+) 810 WP_081172672.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OTEC02_RS01655 (OTEC02_01655) pilY1 344066..347920 (+) 3855 WP_213033135.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35800.51 Da        Isoelectric Point: 6.9683

>NTDB_id=220079 OTEC02_RS01645 WP_081172671.1 342247..343248(+) (pilW) [Acinetobacter lactucae strain OTEC-02]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTAINNNNVNFVPNVGTNTYIANTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFISP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSIVATAQPTTIAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDSTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=220079 OTEC02_RS01645 WP_081172671.1 342247..343248(+) (pilW) [Acinetobacter lactucae strain OTEC-02]
ATGGCTCACTCATTTGTATCGTGGAAACAACGGGGCTTTACATTAATTGAGCTTATGGTTGCATTGGCTTTAGGCCTAAT
TTTAGTAGCTGCAGCAACTCAATTATTTATTGGTGGACTTTTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGGAATGTAACCAACCCAATCTTA
ACTGATACAACCCCTTGGGGCGGCGTTGTGTTAACTGGCTCAACAGCAATTAATAATAACAATGTTAATTTTGTCCCTAA
TGTTGGAACAAATACCTATATTGCTAACACATTACTCAGTCGTGGCGCAGGAGATACGGTAAGTACAGTTAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCAGCTGTGCAAAGTGATCAATTGACTATCCAATTTATTTCTCCT
ACGAATATGACCAATTGTGAAGGTGTGAATGTACTTGCAGGAGATTTAATTGTAGAGCGTTATTTTTTACGTCTTGATAG
CAATGGTAGTTCACAGCAAGATTATGCACTCGCATGTGATGCAAATACTCCCTCTATTGTAGCCACAGCTCAACCGACAA
CTATTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTTCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTACTATACCATTCCCCAATACCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAGTACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)

Type IV Pilus-assembly protein W (PilW)

(181-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.685

100

0.847

Multiple sequence alignment