Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXX15_RS02350 Genome accession   NZ_CP025847
Coordinates   512087..512824 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 602354     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507087..517824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX15_RS02335 clpC 507541..510114 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CXX15_RS02340 yfiH 510244..510975 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CXX15_RS02345 rluD 510972..511952 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXX15_RS02350 comL 512087..512824 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXX15_RS02355 raiA 513095..513436 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXX15_RS02360 pheL 513540..513587 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CXX15_RS02365 pheA 513686..514846 (+) 1161 WP_129547486.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXX15_RS02370 tyrA 514889..516010 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXX15_RS02375 aroF 516021..517091 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXX15_RS02380 yfiL 517301..517666 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220075 CXX15_RS02350 WP_000197686.1 512087..512824(+) (comL) [Escherichia coli strain 602354]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220075 CXX15_RS02350 WP_000197686.1 512087..512824(+) (comL) [Escherichia coli strain 602354]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment