Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OTEC02_RS01005 Genome accession   NZ_CP020015
Coordinates   222672..223262 (+) Length   196 a.a.
NCBI ID   WP_081172585.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217672..228262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS00980 (OTEC02_00980) - 217738..218550 (-) 813 WP_061874396.1 SDR family NAD(P)-dependent oxidoreductase -
  OTEC02_RS00985 (OTEC02_00985) - 218654..219025 (-) 372 WP_016143748.1 MerR family transcriptional regulator -
  OTEC02_RS00990 (OTEC02_00990) tenA 219090..219764 (-) 675 WP_031949588.1 thiaminase II -
  OTEC02_RS00995 (OTEC02_00995) - 220027..221100 (+) 1074 WP_081172580.1 DUF475 domain-containing protein -
  OTEC02_RS01000 (OTEC02_01000) - 221256..222620 (+) 1365 WP_081172583.1 MFS transporter -
  OTEC02_RS01005 (OTEC02_01005) ssb 222672..223262 (+) 591 WP_081172585.1 single-stranded DNA-binding protein Machinery gene
  OTEC02_RS01010 (OTEC02_01010) - 223303..223626 (-) 324 WP_081172587.1 AzlD domain-containing protein -
  OTEC02_RS01015 (OTEC02_01015) - 223623..224318 (-) 696 WP_081172589.1 AzlC family ABC transporter permease -
  OTEC02_RS01020 (OTEC02_01020) - 224387..224935 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  OTEC02_RS01025 (OTEC02_01025) - 225241..226683 (+) 1443 WP_081172591.1 amino acid permease -
  OTEC02_RS01030 (OTEC02_01030) - 226749..228248 (-) 1500 WP_213033133.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21267.06 Da        Isoelectric Point: 6.4832

>NTDB_id=220070 OTEC02_RS01005 WP_081172585.1 222672..223262(+) (ssb) [Acinetobacter lactucae strain OTEC-02]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGGYGSQ
GGFGNGGSNPQAGGFAPKAPQQPASAPAELDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=220070 OTEC02_RS01005 WP_081172585.1 222672..223262(+) (ssb) [Acinetobacter lactucae strain OTEC-02]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGATCAGATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAGTGGCGGCGGTTATGGTAGCCAA
GGTGGTTTTGGTAATGGTGGAAGCAATCCTCAAGCAGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACC
AGCTGAATTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.451

100

0.546
  ssb Vibrio cholerae strain A1552

44.279

100

0.454
  ssb Neisseria meningitidis MC58

39.394

100

0.398
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.383

Multiple sequence alignment