Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BVZ63_RS02435 | Genome accession | NZ_CP020014 |
| Coordinates | 503802..504215 (-) | Length | 137 a.a. |
| NCBI ID | WP_105197661.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 11P6H | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 498802..509215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVZ63_RS02405 (BVZ63_499) | - | 499185..499457 (-) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
| BVZ63_RS02410 (BVZ63_500) | - | 499597..500187 (-) | 591 | WP_005656455.1 | YjaG family protein | - |
| BVZ63_RS02415 (BVZ63_501) | nudC | 500223..501017 (-) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| BVZ63_RS02420 (BVZ63_502) | nfuA | 501084..501680 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BVZ63_RS02425 (BVZ63_503) | - | 501756..502442 (-) | 687 | WP_005686895.1 | ComF family protein | - |
| BVZ63_RS02430 (BVZ63_504) | comE | 502455..503792 (-) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BVZ63_RS02435 (BVZ63_505) | comD | 503802..504215 (-) | 414 | WP_105197661.1 | pilus assembly protein PilP | Machinery gene |
| BVZ63_RS02440 (BVZ63_506) | comC | 504212..504733 (-) | 522 | WP_044345309.1 | competence protein ComC | Machinery gene |
| BVZ63_RS02445 (BVZ63_507) | comB | 504730..505236 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BVZ63_RS02450 (BVZ63_508) | comA | 505237..506034 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BVZ63_RS02455 (BVZ63_509) | - | 506133..508733 (+) | 2601 | WP_105197663.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15712.91 Da Isoelectric Point: 4.7159
>NTDB_id=220047 BVZ63_RS02435 WP_105197661.1 503802..504215(-) (comD) [Haemophilus influenzae strain 11P6H]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYRVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSL
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYRVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSL
Nucleotide
Download Length: 414 bp
>NTDB_id=220047 BVZ63_RS02435 WP_105197661.1 503802..504215(-) (comD) [Haemophilus influenzae strain 11P6H]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGAGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTCTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGAGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
97.08 |
100 |
0.971 |
| comD | Haemophilus influenzae 86-028NP |
96.35 |
100 |
0.964 |