Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | BVZ63_RS02445 | Genome accession | NZ_CP020014 |
| Coordinates | 504730..505236 (-) | Length | 168 a.a. |
| NCBI ID | WP_005649305.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 11P6H | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 499730..510236
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVZ63_RS02415 (BVZ63_501) | nudC | 500223..501017 (-) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| BVZ63_RS02420 (BVZ63_502) | nfuA | 501084..501680 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BVZ63_RS02425 (BVZ63_503) | - | 501756..502442 (-) | 687 | WP_005686895.1 | ComF family protein | - |
| BVZ63_RS02430 (BVZ63_504) | comE | 502455..503792 (-) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BVZ63_RS02435 (BVZ63_505) | comD | 503802..504215 (-) | 414 | WP_105197661.1 | pilus assembly protein PilP | Machinery gene |
| BVZ63_RS02440 (BVZ63_506) | comC | 504212..504733 (-) | 522 | WP_044345309.1 | competence protein ComC | Machinery gene |
| BVZ63_RS02445 (BVZ63_507) | comB | 504730..505236 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BVZ63_RS02450 (BVZ63_508) | comA | 505237..506034 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BVZ63_RS02455 (BVZ63_509) | - | 506133..508733 (+) | 2601 | WP_105197663.1 | penicillin-binding protein 1A | - |
| BVZ63_RS02460 (BVZ63_510) | - | 508806..509651 (+) | 846 | WP_011961682.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| BVZ63_RS02465 (BVZ63_511) | - | 509804..510133 (+) | 330 | WP_011961681.1 | YbaB/EbfC family nucleoid-associated protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19724.61 Da Isoelectric Point: 8.5473
>NTDB_id=220049 BVZ63_RS02445 WP_005649305.1 504730..505236(-) (comB) [Haemophilus influenzae strain 11P6H]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=220049 BVZ63_RS02445 WP_005649305.1 504730..505236(-) (comB) [Haemophilus influenzae strain 11P6H]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
99.405 |
100 |
0.994 |
| comB | Haemophilus influenzae Rd KW20 |
99.405 |
100 |
0.994 |