Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BVZ63_RS02450 Genome accession   NZ_CP020014
Coordinates   505237..506034 (-) Length   265 a.a.
NCBI ID   WP_005686900.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 11P6H     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500237..511034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVZ63_RS02420 (BVZ63_502) nfuA 501084..501680 (-) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  BVZ63_RS02425 (BVZ63_503) - 501756..502442 (-) 687 WP_005686895.1 ComF family protein -
  BVZ63_RS02430 (BVZ63_504) comE 502455..503792 (-) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  BVZ63_RS02435 (BVZ63_505) comD 503802..504215 (-) 414 WP_105197661.1 pilus assembly protein PilP Machinery gene
  BVZ63_RS02440 (BVZ63_506) comC 504212..504733 (-) 522 WP_044345309.1 competence protein ComC Machinery gene
  BVZ63_RS02445 (BVZ63_507) comB 504730..505236 (-) 507 WP_005649305.1 competence protein ComB Machinery gene
  BVZ63_RS02450 (BVZ63_508) comA 505237..506034 (-) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  BVZ63_RS02455 (BVZ63_509) - 506133..508733 (+) 2601 WP_105197663.1 penicillin-binding protein 1A -
  BVZ63_RS02460 (BVZ63_510) - 508806..509651 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BVZ63_RS02465 (BVZ63_511) - 509804..510133 (+) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  BVZ63_RS02470 (BVZ63_512) recR 510191..510793 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31601.99 Da        Isoelectric Point: 6.2348

>NTDB_id=220050 BVZ63_RS02450 WP_005686900.1 505237..506034(-) (comA) [Haemophilus influenzae strain 11P6H]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPTHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=220050 BVZ63_RS02450 WP_005686900.1 505237..506034(-) (comA) [Haemophilus influenzae strain 11P6H]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCACTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment