Detailed information NTG0219956

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXX41_RS14510
• Genome accession: NZ_CP025840
• Coordinates: 2939405..2940397 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 214-4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2934405..2945397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXX41_RS14480	ispD	2934466..2935176 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CXX41_RS14485	ispF	2935176..2935655 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXX41_RS14490	truD	2935652..2936701 (+)	1050	WP_129547226.1	tRNA pseudouridine(13) synthase TruD	-
CXX41_RS14495	surE	2936682..2937443 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXX41_RS14500	pcm	2937437..2938063 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXX41_RS14505	nlpD	2938248..2939342 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXX41_RS14510	rpoS	2939405..2940397 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXX41_RS14515	ygbN	2940491..2941855 (-)	1365	WP_000104459.1	GntP family transporter	-
CXX41_RS14520	ygbM	2941944..2942720 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
CXX41_RS14525	ygbL	2942725..2943363 (-)	639	WP_001278994.1	aldolase	-
CXX41_RS14530	otnK	2943391..2944623 (-)	1233	Protein_2825	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=219956 CXX41_RS14510 WP_000081550.1 2939405..2940397(+) (rpoS) [Escherichia coli strain 214-4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=219956 CXX41_RS14510 WP_000081550.1 2939405..2940397(+) (rpoS) [Escherichia coli strain 214-4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715