Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BV122_RS02615 Genome accession   NZ_CP020009
Coordinates   510083..510880 (-) Length   265 a.a.
NCBI ID   WP_011272050.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 5P54H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505083..515880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV122_RS02585 (BV122_526) nfuA 505930..506526 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BV122_RS02590 (BV122_527) - 506602..507288 (-) 687 WP_011272045.1 ComF family protein -
  BV122_RS02595 (BV122_528) comE 507301..508638 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  BV122_RS02600 (BV122_529) comD 508648..509061 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  BV122_RS02605 (BV122_530) comC 509058..509579 (-) 522 WP_011272048.1 competence protein ComC Machinery gene
  BV122_RS02610 (BV122_531) comB 509576..510082 (-) 507 WP_011272049.1 competence protein ComB Machinery gene
  BV122_RS02615 (BV122_532) comA 510083..510880 (-) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  BV122_RS02620 (BV122_533) - 510979..513573 (+) 2595 WP_042593320.1 penicillin-binding protein 1A -
  BV122_RS02625 (BV122_534) - 513646..514491 (+) 846 WP_105182564.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV122_RS02630 (BV122_536) - 514660..514989 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  BV122_RS02635 (BV122_537) recR 515120..515722 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31392.66 Da        Isoelectric Point: 6.2334

>NTDB_id=219870 BV122_RS02615 WP_011272050.1 510083..510880(-) (comA) [Haemophilus influenzae strain 5P54H1]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLNELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=219870 BV122_RS02615 WP_011272050.1 510083..510880(-) (comA) [Haemophilus influenzae strain 5P54H1]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AAATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
CTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

100

100

1
  comA Haemophilus influenzae Rd KW20

96.226

100

0.962

Multiple sequence alignment