Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV122_RS02600 | Genome accession | NZ_CP020009 |
| Coordinates | 508648..509061 (-) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain 5P54H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 503648..514061
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV122_RS02570 (BV122_523) | - | 504031..504303 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| BV122_RS02575 (BV122_524) | - | 504443..505033 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| BV122_RS02580 (BV122_525) | nudC | 505069..505863 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| BV122_RS02585 (BV122_526) | nfuA | 505930..506526 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| BV122_RS02590 (BV122_527) | - | 506602..507288 (-) | 687 | WP_011272045.1 | ComF family protein | - |
| BV122_RS02595 (BV122_528) | comE | 507301..508638 (-) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| BV122_RS02600 (BV122_529) | comD | 508648..509061 (-) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| BV122_RS02605 (BV122_530) | comC | 509058..509579 (-) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| BV122_RS02610 (BV122_531) | comB | 509576..510082 (-) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| BV122_RS02615 (BV122_532) | comA | 510083..510880 (-) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| BV122_RS02620 (BV122_533) | - | 510979..513573 (+) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=219867 BV122_RS02600 WP_011272047.1 508648..509061(-) (comD) [Haemophilus influenzae strain 5P54H1]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=219867 BV122_RS02600 WP_011272047.1 508648..509061(-) (comD) [Haemophilus influenzae strain 5P54H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |