Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BV083_RS01995 Genome accession   NZ_CP020006
Coordinates   416243..416935 (-) Length   230 a.a.
NCBI ID   WP_005686720.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 48P106H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411243..421935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV083_RS01960 (BV083_404) - 412817..413023 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV083_RS01965 (BV083_405) - 413097..413303 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV083_RS01970 (BV083_406) - 413388..413594 (-) 207 WP_015701556.1 heavy-metal-associated domain-containing protein -
  BV083_RS01975 (BV083_407) - 413679..413885 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  BV083_RS01980 (BV083_408) cueR 413962..414348 (+) 387 WP_005663006.1 Cu(I)-responsive transcriptional regulator -
  BV083_RS01985 (BV083_409) metJ 414362..414679 (-) 318 WP_005634287.1 met regulon transcriptional regulator MetJ -
  BV083_RS01990 (BV083_410) rho 414927..416189 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  BV083_RS01995 (BV083_411) pilD 416243..416935 (-) 693 WP_005686720.1 prepilin peptidase Machinery gene
  BV083_RS02000 (BV083_412) pilC 416932..418149 (-) 1218 WP_005686722.1 type II secretion system F family protein Machinery gene
  BV083_RS02005 (BV083_413) pilB 418146..419543 (-) 1398 WP_005686724.1 GspE/PulE family protein Machinery gene
  BV083_RS02010 (BV083_414) pilA 419540..419989 (-) 450 WP_005686726.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV083_RS02015 (BV083_415) ampD 420104..420664 (+) 561 WP_005686728.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26677.71 Da        Isoelectric Point: 8.8394

>NTDB_id=219751 BV083_RS01995 WP_005686720.1 416243..416935(-) (pilD) [Haemophilus influenzae strain 48P106H1]
MIYFTMFLLGGIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLPFQPSVSSIQQKKCGHILRYFLNVGVGFIFLQIAF
KDSIFAIWLGLTLLILWAISYLDWYYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=219751 BV083_RS01995 WP_005686720.1 416243..416935(-) (pilD) [Haemophilus influenzae strain 48P106H1]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGCCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGGATTTATATTTTTACAAATTGCTTTC
AAGGACTCTATTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATTAGTTATCTTGATTGGTACTATCA
ACTTATTTCTACTACACCCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACTTTGCCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90.435

100

0.904
  pilD Haemophilus influenzae Rd KW20

90

100

0.9

Multiple sequence alignment