Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUM88_RS18600 Genome accession   NZ_CP020000
Coordinates   3846642..3847235 (-) Length   197 a.a.
NCBI ID   WP_004639902.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3841642..3852235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS18570 (BUM88_18570) - 3842860..3843534 (+) 675 WP_080027961.1 lasso peptide biosynthesis B2 protein -
  BUM88_RS18575 (BUM88_18575) - 3843593..3843796 (+) 204 WP_080027962.1 hypothetical protein -
  BUM88_RS18580 (BUM88_18580) - 3844252..3844683 (-) 432 WP_080027963.1 hypothetical protein -
  BUM88_RS20315 (BUM88_18590) - 3844670..3846091 (-) 1422 WP_228147265.1 S1 family peptidase -
  BUM88_RS18595 (BUM88_18595) - 3846222..3846486 (-) 265 Protein_3607 site-specific integrase -
  BUM88_RS18600 (BUM88_18600) ssb 3846642..3847235 (-) 594 WP_004639902.1 single-stranded DNA-binding protein Machinery gene
  BUM88_RS18605 (BUM88_18605) - 3847287..3848651 (-) 1365 WP_003654007.1 MFS transporter -
  BUM88_RS18610 (BUM88_18610) - 3848799..3849881 (-) 1083 WP_003654009.1 DUF475 domain-containing protein -
  BUM88_RS18615 (BUM88_18615) tenA 3850146..3850820 (+) 675 WP_004639906.1 thiaminase II -
  BUM88_RS18620 (BUM88_18620) - 3850887..3851258 (+) 372 WP_080027964.1 MerR family transcriptional regulator -
  BUM88_RS18625 (BUM88_18625) - 3851361..3852167 (+) 807 WP_080027965.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21366.15 Da        Isoelectric Point: 6.4832

>NTDB_id=219745 BUM88_RS18600 WP_004639902.1 3846642..3847235(-) (ssb) [Acinetobacter calcoaceticus strain CA16]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=219745 BUM88_RS18600 WP_004639902.1 3846642..3847235(-) (ssb) [Acinetobacter calcoaceticus strain CA16]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACCTTTCCAAATGGGGGTTC
GTTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACCGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGGTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGTGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGCAAC
CCAGCAGGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGCTTTGCTCCAAAAGCTCCACAACAGCCTGCGTCTGC
ACCAGCAGATTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.804

100

0.518
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

39.487

98.985

0.391
  ssb Neisseria gonorrhoeae MS11

38.462

98.985

0.381

Multiple sequence alignment