Detailed information NTG0219738

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: BUM88_RS17830
• Genome accession: NZ_CP020000
• Coordinates: 3693020..3693520 (-)
• Length: 166 a.a.
• NCBI ID: WP_080027876.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus strain CA16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3688020..3698520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUM88_RS17795 (BUM88_17795)	-	3688090..3689121 (+)	1032	WP_080027874.1	lipase secretion chaperone	-
BUM88_RS17800 (BUM88_17800)	-	3689239..3690180 (+)	942	WP_080028358.1	lipase family alpha/beta hydrolase	-
BUM88_RS17805 (BUM88_17805)	rplS	3690233..3690601 (-)	369	WP_003653770.1	50S ribosomal protein L19	-
BUM88_RS17810 (BUM88_17810)	trmD	3690821..3691576 (-)	756	WP_056482493.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BUM88_RS17815 (BUM88_17815)	rimM	3691619..3692167 (-)	549	WP_003653772.1	ribosome maturation factor RimM	-
BUM88_RS17820 (BUM88_17820)	rpsP	3692189..3692440 (-)	252	WP_000260334.1	30S ribosomal protein S16	-
BUM88_RS17825 (BUM88_17825)	comF	3692587..3693036 (-)	450	WP_080027875.1	type IV pilin protein	Machinery gene
BUM88_RS17830 (BUM88_17830)	comE	3693020..3693520 (-)	501	WP_080027876.1	type IV pilin protein	Machinery gene
BUM88_RS17835 (BUM88_17835)	-	3693530..3697216 (-)	3687	WP_080027877.1	PilC/PilY family type IV pilus protein	-
BUM88_RS17840 (BUM88_17840)	-	3697241..3697987 (-)	747	WP_080027878.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 166 a.a.
• Molecular weight: 18237.00 Da
• Isoelectric Point: 9.2223

>NTDB_id=219738 BUM88_RS17830 WP_080027876.1 3693020..3693520(-) (comE) [Acinetobacter calcoaceticus strain CA16]
MKKNMGFTLIELMIVVMIVAVFAAIAIPSYQAQIRRADTAAVQQELLKLAGQLERYKSQNFSYHGFDPKYLYGQTLAMSS
VDFPSSTNKKYTITLVDISETGRTTLLASSAGLGQRWAISAIPETTGYDALLVTSTGIKCKSKYLVANDLTNINNYTGCA
TNAEKW

Nucleotide

• Length: 501 bp

>NTDB_id=219738 BUM88_RS17830 WP_080027876.1 3693020..3693520(-) (comE) [Acinetobacter calcoaceticus strain CA16]
ATGAAAAAAAATATGGGATTTACCCTGATTGAGCTAATGATTGTCGTCATGATTGTCGCTGTTTTTGCAGCAATTGCGAT
TCCATCATATCAAGCTCAAATTCGCCGTGCAGATACCGCAGCAGTCCAGCAGGAATTGTTAAAACTTGCTGGACAATTAG
AAAGATATAAAAGCCAGAATTTTTCTTATCATGGTTTTGATCCTAAATACTTATATGGACAAACCTTAGCAATGAGTAGT
GTAGATTTTCCAAGCAGTACCAATAAAAAGTACACGATTACTCTAGTCGATATTAGTGAAACAGGACGCACTACTTTATT
AGCGAGTAGTGCTGGATTAGGCCAAAGATGGGCTATTAGCGCAATACCAGAAACGACTGGGTATGATGCGCTGTTAGTTA
CCAGTACAGGGATTAAATGTAAATCTAAGTATTTGGTGGCAAATGATCTAACTAATATCAACAATTACACAGGGTGTGCT
ACAAATGCTGAAAAATGGTAG

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-102)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-26)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Acinetobacter baylyi ADP1	49.708	100	0.512
pilY2	Acinetobacter baumannii D1279779	38.095	100	0.386