Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BUM88_RS17825 Genome accession   NZ_CP020000
Coordinates   3692587..3693036 (-) Length   149 a.a.
NCBI ID   WP_080027875.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687587..3698036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS17795 (BUM88_17795) - 3688090..3689121 (+) 1032 WP_080027874.1 lipase secretion chaperone -
  BUM88_RS17800 (BUM88_17800) - 3689239..3690180 (+) 942 WP_080028358.1 lipase family alpha/beta hydrolase -
  BUM88_RS17805 (BUM88_17805) rplS 3690233..3690601 (-) 369 WP_003653770.1 50S ribosomal protein L19 -
  BUM88_RS17810 (BUM88_17810) trmD 3690821..3691576 (-) 756 WP_056482493.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BUM88_RS17815 (BUM88_17815) rimM 3691619..3692167 (-) 549 WP_003653772.1 ribosome maturation factor RimM -
  BUM88_RS17820 (BUM88_17820) rpsP 3692189..3692440 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  BUM88_RS17825 (BUM88_17825) comF 3692587..3693036 (-) 450 WP_080027875.1 type IV pilin protein Machinery gene
  BUM88_RS17830 (BUM88_17830) comE 3693020..3693520 (-) 501 WP_080027876.1 type IV pilin protein Machinery gene
  BUM88_RS17835 (BUM88_17835) - 3693530..3697216 (-) 3687 WP_080027877.1 PilC/PilY family type IV pilus protein -
  BUM88_RS17840 (BUM88_17840) - 3697241..3697987 (-) 747 WP_080027878.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16497.68 Da        Isoelectric Point: 8.4407

>NTDB_id=219737 BUM88_RS17825 WP_080027875.1 3692587..3693036(-) (comF) [Acinetobacter calcoaceticus strain CA16]
MLKNGSHQGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRTDVQAEMLRINQRLQSYKVVNHSFNNATLDNGTALQSY
PLTGTAFYTVTLAIDADNQGYLLKATPIIASIQNGNGEVCVNQDQQRYWFKGGICSSANLSNTSNWDGR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=219737 BUM88_RS17825 WP_080027875.1 3692587..3693036(-) (comF) [Acinetobacter calcoaceticus strain CA16]
ATGCTGAAAAATGGTAGTCATCAAGGATTTACCTTAATTGAGCTGATGATTGTGGTGGCGATCATTGCAATTTTGGCAGC
AATTGCTTATCCGTCTTATACCCAATATAAAATTCGTACTAACCGTACTGATGTACAAGCTGAGATGCTGCGTATTAATC
AACGATTACAAAGCTATAAAGTGGTTAATCATAGTTTTAATAATGCTACTTTAGATAATGGTACAGCATTACAAAGTTAT
CCTTTAACAGGAACTGCTTTTTATACTGTAACTTTAGCCATTGATGCTGATAATCAGGGATATTTACTCAAAGCTACTCC
AATTATTGCTTCTATACAAAATGGTAATGGTGAGGTCTGCGTAAATCAGGATCAACAGCGCTATTGGTTTAAAGGTGGAA
TCTGCTCATCAGCAAACTTGTCAAATACTTCAAATTGGGATGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-113)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

62.238

95.973

0.597
  pilE Acinetobacter baumannii D1279779

47.482

93.289

0.443

Multiple sequence alignment