Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B2G73_RS16545 Genome accession   NZ_CP019986
Coordinates   3369586..3370110 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter werkmanii strain BF-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3364586..3375110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G73_RS16525 soxR 3366229..3366687 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  B2G73_RS16530 soxS 3366774..3367097 (+) 324 WP_005132611.1 superoxide response transcriptional regulator SoxS -
  B2G73_RS16535 - 3367100..3368686 (-) 1587 WP_079225664.1 EAL domain-containing protein -
  B2G73_RS16540 - 3369239..3369520 (+) 282 WP_038636276.1 YjcB family protein -
  B2G73_RS16545 ssb 3369586..3370110 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  B2G73_RS16555 uvrA 3370362..3373184 (+) 2823 WP_061382689.1 excinuclease ABC subunit UvrA -
  B2G73_RS16560 - 3373209..3373565 (-) 357 WP_038636271.1 MmcQ/YjbR family DNA-binding protein -
  B2G73_RS16565 aphA 3373692..3374405 (-) 714 WP_061382690.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=219600 B2G73_RS16545 WP_003826621.1 3369586..3370110(-) (ssb) [Citrobacter werkmanii strain BF-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=219600 B2G73_RS16545 WP_003826621.1 3369586..3370110(-) (ssb) [Citrobacter werkmanii strain BF-6]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGCCGTCAGGGTGGTGGCGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment