Detailed information NTG0219087

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: B2D37_RS13705
• Genome accession: NZ_CP019947
• Coordinates: 3001647..3002984 (+)
• Length: 445 a.a.
• NCBI ID: WP_079203205.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CC6-YY-74
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2996647..3007984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2D37_RS13690	-	2997547..2999178 (-)	1632	WP_079203202.1	NAD+ synthase	-
B2D37_RS13695	-	2999826..3000062 (+)	237	WP_079203203.1	PP0621 family protein	-
B2D37_RS13700	pilS	3000052..3001644 (+)	1593	WP_079203204.1	PAS domain-containing sensor histidine kinase	Regulator
B2D37_RS13705	pilR	3001647..3002984 (+)	1338	WP_079203205.1	sigma-54 dependent transcriptional regulator	Regulator
B2D37_RS13710	thiO	3003251..3004381 (-)	1131	WP_079203206.1	glycine oxidase ThiO	-
B2D37_RS13715	-	3004548..3005054 (+)	507	WP_079203207.1	GspH/FimT family pseudopilin	-
B2D37_RS13720	-	3005242..3005724 (+)	483	WP_079203208.1	GspH/FimT family pseudopilin	-
B2D37_RS13725	pilV	3005721..3006242 (+)	522	WP_079203209.1	type IV pilus modification protein PilV	-
B2D37_RS13730	-	3006245..3007018 (+)	774	WP_079203210.1	PilW family protein	-
B2D37_RS13735	-	3007015..3007575 (+)	561	WP_079203211.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49680.10 Da
• Isoelectric Point: 6.2073

>NTDB_id=219087 B2D37_RS13705 WP_079203205.1 3001647..3002984(+) (pilR) [Pseudomonas sp. CC6-YY-74]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLDLVQHILQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSTDGAELPVDSRLLGESPPMKALRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGGRSEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRSIQEKAVRAVGGQQELVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAHLTEVM
LKRLAEGPGLSPVRLDSDALDKLKSYRFPGNVRELENMLERAYTLCEDDRITASDLRLADACGSSETGDASLAQIDNLED
HLEDIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=219087 B2D37_RS13705 WP_079203205.1 3001647..3002984(+) (pilR) [Pseudomonas sp. CC6-YY-74]
ATGACCCGCCAGAGAGCCCTGATCGTCGACGATGAGCCCGATATCCGCGAACTCCTGGAAATCACCCTAGGCCGCATGAA
GCTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGCGAATGGCTGGCCAAGGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGACCTGGTGCAGCATATCCTGCAACGTCATCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACGCGCTGAAAGCCGGCGCCTTTGACTTCCTGACCAAGCCGGTCGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACCGCTCTGCGCCTGCGCTCGACGGACGGCGCAGAGCTGCCGGTCGATAGCC
GCCTGCTCGGCGAGTCGCCGCCGATGAAGGCGCTGCGCAAACAGATCCTCAAACTCGCGCGCAGCCAGGCGCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCTCGCCTGATCCACGAACAGGGCGGTCGCAGCGAACAGCCGTT
CGTGCCGGTGAACTGCGGCGCGATCCCGTCGGAGCTGATGGAAAGCGAATTTTTCGGCCACAAGAAGGGTAGCTTCACCG
GCGCTATCGAAGACAAGCAGGGGCTGTTTCAGGCGGCCAATGGCGGCACCCTGTTTCTCGACGAAGTCGCCGATCTGCCC
TTGCCCATGCAGGTCAAGCTGCTGCGCTCGATTCAGGAGAAAGCCGTACGCGCGGTCGGCGGCCAACAGGAGCTGGTGGT
CGATGTGCGCATTCTCTGCGCCACTCACAAAGACCTGGCCGCAGAGGTCGCCGCAGGACGCTTCCGTCAGGATCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCACCGTTGCGCGAGCGACGCGAAGACATCGCCCACCTGACCGAGGTCATG
CTCAAGCGCCTGGCCGAAGGCCCCGGCCTGAGCCCGGTCAGACTGGACTCCGACGCGCTGGACAAACTCAAGAGCTATCG
CTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAAGACGACCGCATCACCGCCA
GTGACCTGCGCCTGGCCGACGCCTGTGGCTCCAGCGAAACCGGCGACGCCAGCCTGGCGCAGATCGACAACCTGGAAGAC
CACCTGGAAGACATCGAGCGCAAGCTGATCATGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCCGCCGCCCAACG
CCTGGGCCTGAGCTTTCGCTCGATGCGCTACCGGCTGAAGAAACTGGGGATCGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.966	100	0.87
pilR	Acinetobacter baumannii strain A118	49.891	100	0.515
luxO	Vibrio cholerae strain A1552	38.739	99.775	0.387