Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   B2D37_RS13700 Genome accession   NZ_CP019947
Coordinates   3000052..3001644 (+) Length   530 a.a.
NCBI ID   WP_079203204.1    Uniprot ID   -
Organism   Pseudomonas sp. CC6-YY-74     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995052..3006644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2D37_RS13685 - 2996134..2997135 (+) 1002 WP_079203201.1 outer membrane protein assembly factor BamD -
  B2D37_RS13690 - 2997547..2999178 (-) 1632 WP_079203202.1 NAD+ synthase -
  B2D37_RS13695 - 2999826..3000062 (+) 237 WP_079203203.1 PP0621 family protein -
  B2D37_RS13700 pilS 3000052..3001644 (+) 1593 WP_079203204.1 PAS domain-containing sensor histidine kinase Regulator
  B2D37_RS13705 pilR 3001647..3002984 (+) 1338 WP_079203205.1 sigma-54 dependent transcriptional regulator Regulator
  B2D37_RS13710 thiO 3003251..3004381 (-) 1131 WP_079203206.1 glycine oxidase ThiO -
  B2D37_RS13715 - 3004548..3005054 (+) 507 WP_079203207.1 GspH/FimT family pseudopilin -
  B2D37_RS13720 - 3005242..3005724 (+) 483 WP_079203208.1 GspH/FimT family pseudopilin -
  B2D37_RS13725 pilV 3005721..3006242 (+) 522 WP_079203209.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58585.80 Da        Isoelectric Point: 9.0017

>NTDB_id=219086 B2D37_RS13700 WP_079203204.1 3000052..3001644(+) (pilS) [Pseudomonas sp. CC6-YY-74]
MSVEALALTGTQGRRVLRLYHLYRLTIGLALVLLISSDMDTQLLNLAQVELFRYGSWFYLILNMLVAVLVQRPRNVVQIF
SLAMVDVILLSALFYAAGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAVATIGLIYLTFYLSLSRPEASAQYVQAGALG
TLCFAAALLVQGLTRRLQDSESLAEQRAADVASLEALNALILQRMRTGILVLDAQHRVLLANQGALHLLGHDALTGKILD
PHCPELVKRLQQWLHNPTLRPSSLQAFADGPTLQPSFIALQRGGQRHILVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDQRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWMHRFASEFRSSAAPG
QTLHLETQSGTVQTRMDPHQLTQVLTNLVQNGLRYSAQNNPQGQVWLKLFRDKSSDLPALEILDDGPGVAPEQLQHIFEP
FFTTENKGTGLGLYISRELCESNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=219086 B2D37_RS13700 WP_079203204.1 3000052..3001644(+) (pilS) [Pseudomonas sp. CC6-YY-74]
GTGAGCGTTGAAGCGCTAGCGCTCACCGGTACCCAGGGCCGCCGCGTGCTGCGGCTCTACCACCTGTATCGTCTGACCAT
CGGTTTGGCCCTGGTCCTGTTGATTTCCAGCGACATGGACACACAGCTACTGAACCTGGCCCAGGTCGAGTTGTTCCGTT
ACGGCAGCTGGTTTTACCTGATCCTGAATATGCTGGTGGCCGTGCTGGTGCAGCGCCCCCGCAACGTGGTGCAGATCTTC
AGCCTGGCCATGGTCGATGTGATCCTGCTGTCCGCCCTGTTCTATGCGGCCGGCGGCACGCCCAGCGGGATCGGCAACCT
GCTGATCGTTGCGGTGGCCATCGCCAATATTCTGCTGCGCGGACGCATCGGCCTGCTGATCGCCGCTGTCGCCACCATCG
GCCTGATCTACTTGACCTTCTACCTTAGCCTCAGTCGCCCGGAAGCCAGCGCGCAGTACGTGCAAGCTGGGGCGCTCGGC
ACTCTGTGTTTTGCCGCCGCCCTGCTCGTGCAAGGGCTGACCCGGCGCCTGCAAGACAGCGAAAGCCTGGCCGAACAGCG
CGCGGCAGACGTCGCCAGCCTGGAAGCCCTGAACGCCCTGATCCTACAGCGCATGCGTACCGGCATCCTGGTGCTCGACG
CGCAGCATCGGGTACTGCTGGCCAACCAGGGCGCACTGCACCTGCTCGGCCATGATGCACTGACCGGCAAGATCCTCGAC
CCGCACTGCCCCGAACTGGTCAAGCGCCTGCAGCAATGGTTGCACAACCCGACGTTACGCCCCTCGAGCCTGCAGGCCTT
TGCCGATGGCCCGACACTACAACCGAGCTTTATCGCCCTGCAGCGCGGCGGCCAGCGGCACATCCTGGTGTTTCTCGATG
ACATCTCGCAGATTGCCCAGCAGGCCCAGCAGCTCAAGCTCGCCTCCCTCGGTCGCCTGACCGCCGGCATCGCCCATGAG
ATCCGCAACCCGCTCGGCGCGATCAGTCATGCCGCGCAACTGCTGCAGGAGTCGGAAGACCTACATGGCCCGGACCAGCG
TCTGGCGCAAATCATTCAGGATCACTCGCGGCGGATGAACCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGCC
AGGCCGAGCCGCAACTGCTGGACCTGAAATACTGGATGCACCGCTTCGCCAGCGAGTTCCGCAGCTCGGCTGCGCCTGGC
CAGACACTCCACCTGGAGACCCAGAGCGGCACCGTGCAAACCCGCATGGACCCGCACCAACTCACCCAGGTACTGACCAA
TCTGGTACAAAACGGCCTGCGCTACAGCGCGCAGAACAACCCGCAGGGTCAGGTCTGGCTGAAACTGTTCCGCGATAAGA
GCAGCGATCTGCCGGCGCTGGAAATACTCGACGACGGTCCTGGCGTGGCGCCCGAGCAACTGCAGCACATCTTCGAACCG
TTCTTCACCACGGAAAACAAAGGCACCGGCCTCGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCGCGACT
CGACTACAAACCGCGCGAGGGCGGCGGCAGCTGCTTTCGTATCACCTTCGCCCATCCACGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.547

100

0.675

Multiple sequence alignment