Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPSF3K_RS09595 Genome accession   NZ_CP025420
Coordinates   1901302..1901904 (-) Length   200 a.a.
NCBI ID   WP_231070368.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896302..1906904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS09585 (SPSF3K_01945) - 1899630..1900589 (+) 960 WP_071349337.1 IS30-like element IS1062 family transposase -
  SPSF3K_RS09590 (SPSF3K_01946) hpf 1900679..1901227 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPSF3K_RS09595 (SPSF3K_01947) comFC/cflB 1901302..1901904 (-) 603 WP_231070368.1 ComF family protein Machinery gene
  SPSF3K_RS09600 (SPSF3K_01948) comFA/cflA 1901963..1903267 (-) 1305 WP_004234978.1 DEAD/DEAH box helicase Machinery gene
  SPSF3K_RS09605 (SPSF3K_01949) - 1903324..1903956 (+) 633 WP_004234979.1 YigZ family protein -
  SPSF3K_RS09610 (SPSF3K_01950) cysK 1904079..1905008 (+) 930 WP_003103108.1 cysteine synthase A -
  SPSF3K_RS09615 (SPSF3K_01951) - 1905084..1905437 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  SPSF3K_RS09620 (SPSF3K_01952) - 1905437..1906837 (-) 1401 WP_003104279.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23199.87 Da        Isoelectric Point: 8.9837

>NTDB_id=218996 SPSF3K_RS09595 WP_231070368.1 1901302..1901904(-) (comFC/cflB) [Streptococcus parauberis strain SPOF3K]
MVNRQSQLCETCSGLFERIGRKHCPTCCKVGIELMCSDCKSWFENGVEVSHKALYKYNLAMKDYFSKYKFQGDYLLKSIF
SKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKKQSEKTKHQRLESENQFSLLHIEN
LPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 603 bp        

>NTDB_id=218996 SPSF3K_RS09595 WP_231070368.1 1901302..1901904(-) (comFC/cflB) [Streptococcus parauberis strain SPOF3K]
ATGGTGAATCGCCAAAGCCAACTGTGTGAAACATGTTCTGGCTTATTCGAAAGAATTGGTAGGAAACATTGCCCAACCTG
TTGCAAAGTTGGTATAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCAC
TATATAAGTATAATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTT
TCTAAAGAATTAAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAAT
GGAAACGCGTGGGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTG
AAGGAAAAAAGCAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAAT
CTTCCAAAAAAAATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCA
GCATGGTATAAATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(112-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.96

99

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

44.949

99

0.445
  comFC/cflB Streptococcus pneumoniae Rx1

44.444

99

0.44
  comFC/cflB Streptococcus pneumoniae D39

44.444

99

0.44
  comFC/cflB Streptococcus pneumoniae R6

44.444

99

0.44
  comFC/cflB Streptococcus mitis SK321

43.939

99

0.435