Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   B1781_RS22050 Genome accession   NZ_CP019936
Coordinates   4661748..4662821 (-) Length   357 a.a.
NCBI ID   WP_078121745.1    Uniprot ID   -
Organism   Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4656748..4667821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1781_RS22025 aroK 4657369..4657884 (-) 516 WP_078121740.1 shikimate kinase AroK -
  B1781_RS22030 pilQ 4657958..4660066 (-) 2109 WP_078121741.1 type IV pilus secretin PilQ -
  B1781_RS22035 - 4660078..4660593 (-) 516 WP_078121742.1 pilus assembly protein PilP -
  B1781_RS22040 - 4660593..4661183 (-) 591 WP_078121743.1 type 4a pilus biogenesis protein PilO -
  B1781_RS22045 - 4661180..4661746 (-) 567 WP_078121744.1 PilN domain-containing protein -
  B1781_RS22050 pilM 4661748..4662821 (-) 1074 WP_078121745.1 pilus assembly protein PilM Machinery gene
  B1781_RS22055 - 4663183..4665648 (+) 2466 WP_078121746.1 penicillin-binding protein 1A -
  B1781_RS22060 - 4665665..4666249 (+) 585 WP_078121747.1 hypothetical protein -
  B1781_RS22065 - 4666250..4667545 (-) 1296 WP_078121748.1 citrate synthase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38451.59 Da        Isoelectric Point: 4.3906

>NTDB_id=218984 B1781_RS22050 WP_078121745.1 4661748..4662821(-) (pilM) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
MGLFTQKKVPLLGLDISSTAVKLLELSQHNGRGGVRYRVESYAVEPLPSTAVVEKNIADVEAVGKAIRSVVRKAGTRNKR
AAVAVSGSAVITKVISMPAALSESEMESQIQLEADQYIPYPLEEVNIDFQVQGPSENSPELVDVLLAASRSENVDDRVAA
LELAGLTCDIVDVEAYAMENACSQLADQWPNAGEDQIIAVADIGATTTTLNVLHNNRIIYTREQNFGGRQLTEEIQRRYG
LSVEEAGMAKRQGGLPDNYIPEVLEPFKEAMAQQVNRSIQFFYSASAFNNVDLVVLAGGSSSVPGIDDLIQERLGVETVI
ANPFANMAVASKVKPQVLSNDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=218984 B1781_RS22050 WP_078121745.1 4661748..4662821(-) (pilM) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
ATGGGCCTTTTTACCCAGAAGAAGGTGCCGCTACTCGGACTGGATATCAGTTCAACAGCGGTGAAGTTGCTCGAATTGAG
TCAACATAATGGCCGTGGGGGTGTCCGTTATCGCGTAGAGAGTTACGCGGTGGAGCCGCTTCCCTCAACGGCAGTCGTTG
AGAAAAACATCGCTGATGTCGAGGCGGTCGGCAAGGCGATCCGCAGCGTTGTCCGCAAGGCGGGTACCCGCAATAAACGG
GCGGCGGTGGCCGTTTCCGGATCGGCAGTCATCACTAAGGTGATTTCGATGCCGGCGGCGCTCTCCGAATCTGAAATGGA
GAGCCAGATCCAGCTCGAAGCGGATCAGTACATCCCGTACCCCCTCGAAGAGGTCAACATCGATTTCCAGGTCCAGGGGC
CGTCGGAAAACAGCCCGGAACTGGTCGATGTACTACTGGCGGCATCGCGTAGCGAGAACGTCGATGACCGGGTCGCGGCG
CTGGAACTCGCCGGGTTGACCTGTGACATCGTCGATGTCGAGGCCTACGCGATGGAAAACGCCTGCAGCCAGCTGGCCGA
CCAGTGGCCCAACGCGGGTGAAGATCAGATCATCGCCGTCGCCGATATCGGCGCGACGACGACCACCCTCAACGTCCTGC
ACAACAACCGCATCATTTATACGCGTGAACAGAATTTCGGTGGGCGCCAGCTGACCGAAGAGATTCAGCGTCGATACGGC
TTGTCGGTGGAAGAGGCCGGCATGGCGAAGCGCCAGGGCGGTCTGCCGGACAATTACATCCCGGAAGTCCTCGAGCCGTT
CAAAGAAGCGATGGCACAGCAGGTCAATCGTTCCATCCAGTTCTTCTATTCGGCAAGTGCGTTCAACAACGTCGACTTGG
TCGTTTTGGCGGGCGGCAGCTCGTCGGTACCGGGTATCGACGACCTGATTCAGGAGCGTCTTGGCGTTGAAACGGTGATT
GCCAATCCGTTTGCGAACATGGCGGTTGCTTCAAAGGTTAAACCACAGGTGCTCAGTAACGACGCTCCGGCGTTGATGAT
CGCTTGCGGACTGGCACTGAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.541

100

0.515
  comM Acinetobacter nosocomialis M2

51.541

100

0.515
  comM Acinetobacter baylyi ADP1

49.02

100

0.49
  pilM Legionella pneumophila strain ERS1305867

46.218

100

0.462

Multiple sequence alignment